Conserved Protein Domain Family
VI_chp_6

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TIGR03359: VI_chp_6 
type VI secretion protein, VC_A0110 family
This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.
Statistics
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PSSM-Id: 274541
Aligned: 40 rows
Threshold Bit Score: 575.71
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011490766   8 LPAYYQGELHYIHELFQEFAQQHPKIARRLGAQAGEAGDPYVERLLQSFAITAARSQMRIDRFSLDIPLRKLDGVDLNLT 87  Burkholderia xe...
WP_031841577   3 nsKYFQDELTYLRESGSEFAKYHPKLTHFLS---EGTFDPDVERLLEGFAFLTGRIREKIDDELPELTQSLMTLLWPHYM 79  Vibrio parahaem...
WP_010953541   3 LRDRFSEELRYLHELGNDFAKDNPQLARLLG---KGASDPDVERLMEAFAFLTAKLRLKLEDDLPELTHPMLQLLWPNYL 79  Pseudomonas putida
WP_011104074   3 FNHYYQDELMALRQMGVKFSERNPALAPFLG---QVGLDPDVERLLEGFAFLTGRLRQKLDDDLPELTHSLMQLLWPNYM 79  Pseudomonas syr...
WP_011261634   3 FNHYYQSELAALRELGKSFSRENPALAPYLG---QEGLDPDIERLFEGFAFLVGRLHQRLDNQLPELTHSLMRLLWPNYV 79  Aliivibrio fisc...
WP_011147429   5 tLRYYEAEMRYLREAGREFAKAHPDRAAALNLDKIVMRDPFVERLFEGFAFMIGSLREKLDDDLPELTEGLVSLLWPHYL 84  Photorhabdus lu...
WP_011554797   2 FSKYYLSELSYLREMGRAFGLANPSVAGLLV---ERGADPDVERLLEGFAFLAARIRERVDDDVPELVHGLTELLLPHYL 78  Myxococcus xanthus
WP_011301384  12 ILRYYEAEMRYLREAGKEFAQAFPDRARMLNIDRIGERDPHVERLFEGFAFLMGRLRHKLDDELPELTEGLVSMLWPHYL 91  Cupriavidus pin...
WP_010941100   2 ITRHFQDELARLKELGAEFSVTHPALAPMLG---GPSTDPDVERLLEGVAFQTALLRQKLDDDFPEVVHDLVRLVAPHYL 78  Geobacter sulfu...
WP_011342599   1 mgKYFDTEMRLLQEAAQDFARAFPEKARMLGLQDIKDCDPYVERLLEGMAFLTAEVKQRIDDDVPELAEALLSHVRPYFL 80  Pelobacter carb...
WP_011490766  88 APLPSLGVARFYPDAEapHSPQGLTLARGTRLTVHAA---------Ed----------aTECAFLTSQPLRLWPVAITRA 148 Burkholderia xe...
WP_031841577  80 RSIPSLCISELKPHTG--SVTEKTVVKRGAEMASEQV---------Eg-----------TQCLFRTCYDVNLYPITITNI 137 Vibrio parahaem...
WP_010953541  80 RPLPSATIIKFSPVRQ--SLSQSQRIPKGSRLFSKPV---------Dg-----------VACEFRTCTAVNIHPFEIDTV 137 Pseudomonas putida
WP_011104074  80 RPLPAVSMLQFEALTC---PAIGVTVERETPVESEPV---------Ng-----------MVCHFRTCFATRVLPLKLVSL 136 Pseudomonas syr...
WP_011261634  80 QAIPAMSTLQFTPASE--A-TQASIIKRGTEVLSQPI---------Dg-----------IQCKFKTCFDVDIYPVSLHSS 136 Aliivibrio fisc...
WP_011147429  85 RTIPSLSIVEFGMDWA--QLKNSVQVKKGFEILSQPI---------Gps---------kTRCRYTTTQAVQLLPLALTDA 144 Photorhabdus lu...
WP_011554797  79 RPLPASTIVEFTPHLR--ALRGRSRLAAGAEVASQPI---------Dg-----------TSCVFRTTTDVDLLPVQLTDA 136 Myxococcus xanthus
WP_011301384  92 RMIPSLSILELIPSPG--VLQGHETLAAGLEAVSDPVllgsqqgigNs-----------VECIYRTTQPVDLYPLSVAEA 158 Cupriavidus pin...
WP_010941100  79 RPVPATTIVAFEPKP---SLTRSRLIPAGTELASIPV---------Eg-----------TRCLFRTTSPVELHPLELLEA 135 Geobacter sulfu...
WP_011342599  81 RPFPSCCIMQFSPRPG--QMRQTTTLPKGTSLTSKGV---------TlpdhtrqtvgerVSCSFRTTSDVTLQPLRLASF 149 Pelobacter carb...
WP_011490766 149 KPTGIPADVPALYRYVHdgqdasrVrGALRLSLATVNGMAFRGLEaLDELPVYLCGEEKMASQLFELIHTSVVGIVMgv- 227 Burkholderia xe...
WP_031841577 138 EQTNS-----------R-------TsSAIDVTLSTEHGLELSRIG-LDTLRLHLHGEIHITRTVFLWLFRYLDYVEL--- 195 Vibrio parahaem...
WP_010953541 138 AATQTSDS------------------SVICIGLQSLVERPLNSLG-CTSLDFYLSGDARTARTLYLWVSQYLKHVSV--- 195 Pseudomonas putida
WP_011104074 137 SCS-----------AGG-------AgTVLKLRLDINGDGHVGNLE-FSQLRLHFAGERHISQALYLGMMRQLNAIKL--- 194 Pseudomonas syr...
WP_011261634 137 SFTAN-----------G-------HgGIYQLRLELPSGIDLASLN-MKQLRVHFNGDKASCLSLIMALCSSTTQAEF--- 194 Aliivibrio fisc...
WP_011147429 145 SLQEEP----------N-------GrSVIRLRFDCGTLVDWHQID-LSCLPLYLSADSPLAYALHRAFTLQTQQLYLr-- 204 Photorhabdus lu...
WP_011554797 137 LLDRSSITAP-----------------VLRLYFQTTEQGRAEVLR-EQGLRLFIHADLSAASVVLLWLLRYCRQVRVr-- 196 Myxococcus xanthus
WP_011301384 159 ----------GTYARED-------GrSVIHLRLARQAQSRQEQLK-VPRLRLYLHADRPVALALYAALTAQPLAMHVrip 220 Cupriavidus pin...
WP_010941100 136 TFAQPAGSAPVVTLSL------------------SLTGLSLDHWE-PRSLRFFLAGDHAPAAELFLILSRHLKRIVI--- 193 Geobacter sulfu...
WP_011342599 150 QLATAY----------H-------GrQEIQLHFQFDHDIAPDQLD-LDSIKLYLHGDPATSMALYQALTAQAEEVSVt-- 209 Pelobacter carb...
WP_011490766 228 pgEF-EKGG----LYgA----------KLPG-MPymqVKHAGLEPHESLLRPVAAKFHGHRLVHEFFALPSRFGFFTITG 291 Burkholderia xe...
WP_031841577 196 --DV-G-GG----YK-H----------RLGP-EY---VKPVGHEEDEALLPYSKNSFAGYRLLQELFSLPDKFMFFDITG 252 Vibrio parahaem...
WP_010953541 196 --TI-NGEV----R-------------RLPA-NS---IAFPGFSPNDALLPYPQNVFDGYRILQEYFAFPQRFHFFSVTG 251 Pseudomonas putida
WP_011104074 195 --SPlDAQG----AL-ImtaegkaielAIPV-DQ---VKPVGFAEEESLIPYPLNTFRGYRYLQEYFFFPEKFLFVDVFG 263 Pseudomonas syr...
WP_011261634 195 --CA-LDKEleqiNR-S----------TFPP-HS---IKPVGFKTNEAIFDYPLNTFEGYRHIQEFFCYPEKYYYIDLTE 256 Aliivibrio fisc...
WP_011147429 205 --LP-GQPD----RQ-P----------FDG---R---FSPMGFGEEERLWPKGESSFSGYQLLLEYFTFREKFMFVTLCG 260 Photorhabdus lu...
WP_011554797 197 -gAS-GQGD----G--I----------KLPV-NA---IQPVGFHRDFKLLPWP-RASEGYRHLQEYLTLPEKFLFFEVRG 253 Myxococcus xanthus
WP_011301384 221 gyPI-DRPG----AP-Q----------SMTG-LR---LAPVGFGASERLWPKPDNAFGGYQLLLEYFTFPEKFMFVDLLG 280 Cupriavidus pin...
WP_010941100 194 --TP-EERG----AS-A----------SLPA-AC---LQPVGLNDDEHLIPWPSHAFPGYRLLQEYFAAPQRFLFLELTG 251 Geobacter sulfu...
WP_011342599 210 --FP-GEAV----RP-C----------VLGRqEA---IEPCHLDAENLLVSSSGRGFLGFHLLHEYFCFREKYQFVALRN 268 Pelobacter carb...
WP_011490766 292 LAAGLK-----HIGGP--EVEIVLLLAREAATLDQQIGVRDFALYCTPIVNLYPATSERLTMHPEKHEHPLTPVAERPGD 364 Burkholderia xe...
WP_031841577 253 LEWLKG-----IPQRS--TVKIKFHF-KRALPSEVVLKDKHLRLHCTPAVNLFEKDGDPIRLDHRRNEYKVRPQSNTQEH 324 Vibrio parahaem...
WP_010953541 252 LEKIWP-----AHDSQ--QVNLEFHF-TRQLPDSLRVGKADFNLFCAPAVNLFQHSAEPIDLSGKDAMVPLKPKGTAPHG 323 Pseudomonas putida
WP_011104074 264 VDVLRSldedvLKNTR--GVQLVFDM-ESAEIQGLRPGVENVKLYCTPVVNLFKQDALPILADSRQDEYLLVPAHYARGS 340 Pseudomonas syr...
WP_011261634 257 LPVWPA-----QFSQGckYVDLKFTLD-NITQQPFYANRVQPELFCTPIVNSFKSDTQPLLLNHRKDQYKITPVSLNDDS 330 Aliivibrio fisc...
WP_011147429 261 LEKLTL-----PERTP--WFELDVVL-RESWPFDLPFSAEHIRLHCTPVINLFRLESDPLQLAPLQTEYLLYPVRYQDGH 332 Photorhabdus lu...
WP_011554797 254 LDAAAG-----LKE-D--RFEIAFHL-ERPPPLDARIHREMFRLHCAPVVNLFSVPADPILHRTLDREHLLRASDLPPNH 324 Myxococcus xanthus
WP_011301384 281 LDMAAI-----PSDVQ--HFDVEVVLAK-LFPDDMRFSAENIRLFCTPVINLFELEADPITVTHHETEYRVRTMEQHGQH 352 Cupriavidus pin...
WP_010941100 252 WERWTT-----RGSGS--RFTITFELGE-LTIPPPPVRRDSFVLFASPAVNLFSHDAEPILLDHRVGRYPVRPAGLEPGH 323 Geobacter sulfu...
WP_011342599 269 LNKVSW-----PKKCC--EFMIHIRLAE-ALSDEYRLSRENFRLHCAPVINLFESTSEPISLTHKQTEYPVIADTNHPDG 340 Pelobacter carb...
WP_011490766 365 YEVHSVDRVRGQL-----EEESEKFLFQPLDAALp----DDT--RRNSRYFTLRREQQLVADNerrydthrefVRTLTSI 433 Burkholderia xe...
WP_031841577 325 YEVYSIEQVESWS-----KDERRRKPLIEFESFEh---qINQ--RDKREFYKSKVGERVSG------------RGLERYI 382 Vibrio parahaem...
WP_010953541 324 YEIFSVDQVISTRtttdgNTGEHLRTFRPFESFAh---eIEHvqGRTALYYRCQLEECLHGN------------GVMHRI 388 Pseudomonas putida
WP_011104074 341 CGVYSVDKVTGWQ-----PGGLGYQHYVPFESFEhd-saVSV--KSDSPYYSVRHRASLQHS------------GLDTFL 400 Pseudomonas syr...
WP_011261634 331 STILSVKEVHGWN-----PGQKGRIDFYHFESFEh----NEN--KNRSNYYSIRQEKNIVSG------------HFDTYL 387 Aliivibrio fisc...
WP_011147429 333 TEVYSVDEVSSSK-----REGHQYVPFSSFRHKGg---mLRH--DAPECYFHTRVKRGPSGL-------------CDTWI 389 Photorhabdus lu...
WP_011554797 325 AEIYSVDSVTGLK-----AGRNERRVYRPFYEFTh---tAGG--DAEQSFYRLRRAPSPLDE------------GIDTYI 382 Myxococcus xanthus
WP_011301384 353 VEAYSVDTVRGFD-----AATGERFEYAPFAAFRhrggmLRH--DMPERYFHTRVRRGPSG-------------RFDTWL 412 Cupriavidus pin...
WP_010941100 324 GQVYSVDRVTGIV-----RGAATERIYHPFEQFRd---gADA--QPT---FHTAVSASPV--R----------AGFDVHL 378 Geobacter sulfu...
WP_011342599 341 ILIYSVNGVTGKQ-----PATGKIHLYSALPSFNh------R--AGTDRYYHVSHR---VREG----------RRHMTYL 394 Pelobacter carb...
WP_011490766 434 TLLDENR-KPDETGMRFLTFDAWLTNGDLPCV-QPRNGVNDLTMADAKAVESVGFVRGPTAPRPPLalgARGDAAWELVR 511 Burkholderia xe...
WP_031841577 383 SFHTHNG-DIADLGTETVLMKLQCSNADLAER-LSVGDITY-ATHKSPTYATFKNITKPTQSVSPQ---VNGELQWQLIA 456 Vibrio parahaem...
WP_010953541 389 AFVRADA-NSYIGELETASIDLTCTNRDLPLA-LGIDDIN-ILTELTPPLATYTNLCTPTRPCRPV---LDGQLQWALIS 462 Pseudomonas putida
WP_011104074 401 SF-DLRA-ERAR---ETVSIELTCTNDELPQK-ISVGGICKSC-DGTPDFLRFKNIMPATRSFAPP---MTRDFLWRVIS 470 Pseudomonas syr...
WP_011261634 388 SF---RS-QHTFTNSVTVSIAVTACNGALAQR-LSVNSITET-TDQTTGSATFTNIRTVTPCYTPP---IDKDGLWSLIS 458 Aliivibrio fisc...
WP_011147429 390 ILGGADFdDNELDEEDILSLTLTGTNGQLPRRaLQDTLLN-TAVNPPLAEFTVRNLCEPTLPCYPP---NRDRFHWRVLS 465 Photorhabdus lu...
WP_011554797 383 TLETPRNiAPEVNAEEALSMDLTCTNRSLPSR-LQVGDLTAS-TSASPTQAKFKNISPVSRPARAP---LGTELHWRLLS 457 Myxococcus xanthus
WP_011301384 413 VLGGHAWeQQDTLPQETLSLSVTGTNGMLPRKgLREAGICRMG-GGFTNIGAVRNLTAPTLPVYPP---TGDRFHWRVLS 488 Cupriavidus pin...
WP_010941100 379 AVAYPQG-EGL-PETETLSIALTCSNGRLPEN-LWLGDLCE-PTSSSPESATFHNITPLTPTLLPP---LGKNLLWRLVS 451 Geobacter sulfu...
WP_011342599 395 SVGGA-----MTERQEILSCDITACNGAIPREhLQVRDIKA-PAQEFPSNVTCENITRPSRFLMPP---DRPDYRLALVA 465 Pelobacter carb...
WP_011490766 512 QFHLELAVFDDefdepNPGEGLRLMLRPYLA------AG------DPAMARVLDSLVGATAGAVNDMHcWGGElHLARGI 579 Burkholderia xe...
WP_031841577 457 NMSLNYLSL-------ANIDVLKVLLSTYDFhsrvdrQA------HRASIHRLDGIVSSEMKPIDRVFrG----VSVRGN 519 Vibrio parahaem...
WP_010953541 463 NMSLNYLSL-------LSVEPLKAVIRAYDFmalhdiQQ------ARTTRKRLEGMRDIHTQPMDWLIkGQP----IRGL 525 Pseudomonas putida
WP_011104074 471 NMSLNYLSL-------ANIEALKVILETYDL------PRyydpraEKVSQHLLKGLKSIRHQPVDRLHnGRP----VRGV 533 Pseudomonas syr...
WP_011261634 459 NMSLNYLSLT-------KPEAFKRILLAYDF------AGqqddakGKKHKRLIDGIVSISTKPCDMLYeGAP----VRAM 521 Aliivibrio fisc...
WP_011147429 466 HLGSNFLSMMD-----N-PEVLRGTLALYDW------SD------NEMNYRRLEAIVAVKHSLIERFEqGSLR----RGV 523 Photorhabdus lu...
WP_011554797 458 HLAINQHSL-------ADAAALRRLMDLYNFhsltdnLA------ARASRLRINAIRAVETKPVTRFLeGAP----LRGH 520 Myxococcus xanthus
WP_011301384 489 HLAPNYLSL-------LDAEVLRGSLALYDW------TD------GELNRRRIDAITDVRHRPLQKLVkG----GLQRGV 545 Cupriavidus pin...
WP_010941100 452 HLSLNRLSL-------ASADNLRTLLALYLFeeggdrGD------LAANRKRLDGIEAVIAKPAGRLVgGH----LLRGS 514 Geobacter sulfu...
WP_011342599 466 HLTVSYNSL-------SSIDSFRQLLSLYDW------SD------QEQSGKRIRGLTDIRVSPLNRVYrGA----LLRGM 522 Pelobacter carb...
WP_011490766 580 AVTLTFDESRLDG-W-SPFAFALVLERYVARHVSAHCFTRTTVRTTQRGEIFTFPTRGGTRGVF 641 Burkholderia xenovorans
WP_031841577 520 QFKLVTNSKFFVNeG-DMFLMATVLNEFIRLYSSVNSFTELEVFDEATGEVYNWKSLIGQQTIL 582 Vibrio parahaemolyticus
WP_010953541 526 HTRLKLDQTAFLCeG-DLYLFSCVLAHFFALYASINSFHQLEVINTTNNEHYTWPIQTGKQPLI 588 Pseudomonas putida
WP_011104074 534 KTELTVQPDGFTGeG-SLFLFASVLNEFFALYASLNSFHELHVTSTQGGG-YQWKPRMGQQPLL 595 Pseudomonas syringae group geno...
WP_011261634 522 NTQLHLNTKHFLCeG-ELYLFSTVINEFLSLYTSMNSFNQLHVTSTDGGD-YSWLPRMGQQPLI 583 Aliivibrio fischeri
WP_011147429 524 HIEVTLDSNGFAGaG-DICLFGEMLSRFFALYTDIHLFNRLTLILQPTGERLLWEEQHCQNIPg 586 Photorhabdus luminescens
WP_011554797 521 RTRVDLDEENFMGvG-DSFLFGSVLEELLASHVTINSFNELSIRLHPSQTEFAWLPRNGSQTLL 583 Myxococcus xanthus
WP_011301384 546 EIEVSLDSTRFAGdG-DVELFGEMLNRFLALYATLNLYTRLVVVSQPSGKRLEWPDSKGEGAPF 608 Cupriavidus pinatubonensis
WP_010941100 515 EIVLTLRGDHFASpG-DLFLFGAVLDRFLGGYASLNSFTRLTVRESVRGEVYSWAPRLGHRQLL 577 Geobacter sulfurreducens
WP_011342599 523 DIQLSMEESEYIS-PaDTYMFGTILHHFFSMYASINAFVQTGSRLSPSNSEITWEPLLGENFLI 585 Pelobacter carbinolicus
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