Conserved Protein Domain Family
marine_trans_1

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TIGR03644: marine_trans_1 
probable ammonium transporter, marine subtype
Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Statistics
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PSSM-Id: 274697
Aligned: 18 rows
Threshold Bit Score: 569.682
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011041492  10 YALDTFYFLICGALVMWMAAGFSMLEAGLVRAKNTTEILTKNVALYAIACIMYLVVGYDIMYgGGvflnGiaLDGAS--D 87  Colwellia psych...
WP_011187571  42 YGLDTLYLLLSGAMVMWMAAGFSMLECGLVRSKNVVEILTKNITLFAIASIACLLVGYNIMYgDG----GsiLPSF---- 113 Desulfotalea ps...
WP_011400097  10 YALDTFYFLVMGALVMWMAAGFAMLESGLVRAKNTTEILTKNVALYAIACIMYLICGYEIMYgSG----GyfLTGIM--P 83  Hahella chejuensis
WP_011049401  38 YIFTTFMFLVSGFLVMWMAAGFTMLEAGLVRQKNVTMQLTKNIALFSLAALMYYLIGYNLMYpGD----GwsIDGVL--G 111 Ruegeria pomeroyi
WP_011370921   9 YALDTFYFLMSGALVMWMAAGFAMLEAGLVRTKNTTEILAKNVGLFAIACIMYMLVGYNIMYgDa-------INSVIpgL 81  Thiomicrospira ...
WP_011508452  10 YALDTFYFLVCAVLVMWMAAGFAMLEAGLVRAKNTAEILTKNVVLFAISCTMYLLFSYHLMYsSG----A---GGFM--P 80  Chromohalobacte...
WP_011589801  10 YALDTFYFLICGALVMWMAAGFAMLEAGLVRAKNTTEILTKNVALFAIASIMYMVCGYAIMY-DG----AifLSGIv--- 81  Alcanivorax bor...
WP_011370763  10 YALDTFYFLMSAVLVMWMAAGFAMLEAGLVRSKNTVEILTKNALLYSVACSMYLIVGYNVMYpGD----PisAYLPN--L 83  Thiomicrospira ...
WP_011457170  33 YILTTLLFLVGGFLVFWMAAGFAMLEAGLVRSKNVAMQLTKNIALFSIAAIMYWLVGFGIMYpADw-----lVEGWL--G 105 Jannaschia sp. ...
WP_011567226  36 WIMNSLLFLVGGFLVFFMAAGFAMLEGGLVRSKNASTQMTKNVALFSIAAIMYWLVGYNLMYpLG----DwaIEGYLs-G 110 Roseobacter den...
WP_011041492  88 --A--EalvgavlaESAEAGFDGGAVYSN-ASDFFFQVVFVATAMSIVSGAVAERMKLWAFLAFTVVLTGFIYPMEGSWT 162 Colwellia psych...
WP_011187571 114 --S--FlvggdhspADISLG--GENHYSR-IADFFFQVVFVATAMSVVSGAIAERMKLWAFLLFAVVMCSAIYPVQGYWK 186 Desulfotalea ps...
WP_011400097  84 geT--YvddtlnafAERDGGFSGTAIYSG-ASDFFFQVVFVATAMSIVSGAVAERMKLWAFLAFAVVMTAFIYPMEGSWT 160 Hahella chejuensis
WP_011049401 112 --A--FspaamepvG--LADTETDLTYASvGSDFYFQLMFCATTASIVSGTLAERIKLWPFLVFVLVLTGLIYPIQASWK 185 Ruegeria pomeroyi
WP_011370921  82 --S--FllggdnatAAVVAGGDGAPYYSN-MSDFFFQVVFVATAMSVVSGAVAERMKLMSFFVFAIVLTSVIYPVQGYWK 156 Thiomicrospira ...
WP_011508452  81 --SlgFllga-entADQVLGSNGDLYYSN-RADFFFQVVFVATAMSIVSGAVAERMKLWAFLAFAVVMTAIIYPTSGYWT 156 Chromohalobacte...
WP_011589801  82 --------------GDGVAGAEEAATYAP-SADFFFQVVFVATAMSIVSGAVAERMKLWAFLIFAVVMTGIIYPLEGSWT 146 Alcanivorax bor...
WP_011370763  84 --S--FflgadntvEAVIAGGDGAPYYSG-MSDFIFQAVFAAATMSIVSGAIAERMKLWPFLVFAVVMTSFIYPMEGYWK 158 Thiomicrospira ...
WP_011457170 106 p-F--FaitslepvG--LADTETALDYASvGSDFFFQLMFCATTASIVSGTLAERIKLWPFLIFVVVLTGFIYPIEASWQ 180 Jannaschia sp. ...
WP_011567226 111 --L--FpsvavmeaMGITLADADDASYAStGSDYIFQLMFCAATASIVSGALAERIKLWPFLIFSAILTGLIYPLTASWT 186 Roseobacter den...
WP_011041492 163 WNGdavfGLytL--GDLGFSDFAGSGIVHMAGASAALAGVLLLGARKGKYSKDGKVNAIPGANLPMATLGTFILWMGWFG 240 Colwellia psych...
WP_011187571 187 WGG----GF--L--DHLGFLDFAGSGVVHLCGASAALAGVLLLGPRLGKY-KNGRIKAIPGSNLPLASLGTFILWFGWFG 257 Desulfotalea ps...
WP_011400097 161 WGTqpvfGLysL--DEMGFKDFAGSGIVHLAGAAAALAGVLLLGPRKGKYGPNGQVNAIPGANLPLATLGTFILWMGWFG 238 Hahella chejuensis
WP_011049401 186 WGG----GF--L--DAAGFLDFAGSTVVHSVGGWAALAGALILGPRLGKY-KDGRVIPFMGSNLPLATLGTFILWLGWFG 256 Ruegeria pomeroyi
WP_011370921 157 WGG----GF--L--DQLGFLDFAGSGIVHMTGAAAALAGVLLLGARKGKYGPNGESKAIPGANLPLATLGTFILWLGWFG 228 Thiomicrospira ...
WP_011508452 157 WGG----GW--L--AELGYSDYAGSGIVHMAGAAAALAGVLVLGPRKGKYGKSGAVYAIPGANLPLATLGTFILWMGWFG 228 Chromohalobacte...
WP_011589801 147 WGGadvfGLynL--GDQGFSDFAGSGIVHMAGAAAALAGVLLLGARKGKYGPNGEVHAIPGSNLPLAALGTFILWLGWFG 224 Alcanivorax bor...
WP_011370763 159 WGG----GW--L--DQLGFQDFAGSVVVHMAGAAAALAAVIMVGARKGKYGPNGEVHPIPGANLPMATLGMFILWMGWFG 230 Thiomicrospira ...
WP_011457170 181 WGG----GW--L--SEAGFSDFAGSTLVHAAGGFAALAGAIVLGPRLGKY-KDGRVNPMPGSNLALATLGTFILWLGWFG 251 Jannaschia sp. ...
WP_011567226 187 WGG----GW--LmsGDTPFNDFAGSTIVHACGAAAALAGAIVLGPRIGKY-KDGRVVPMPGSNLPMATLGMFILWLGWFG 259 Roseobacter den...
WP_011041492 241 FNGGSVLKLADINSANSVAMVFLNTNAAAAAGAISALIFAKILFKKADLTMTLNGALAGLVAITAEPSTPSPLQATIFGA 320 Colwellia psych...
WP_011187571 258 FNGGSQLRISTVSDANAVAMAFANTNMAAAGGLLAALILSRIWFGKADLTMALNGALAGLVAITAEPVTPSLLTATGVGA 337 Desulfotalea ps...
WP_011400097 239 FNGGSVLKLGDIGNANSVAIVFLNTNAAAATGAIAALITARLLFGKADLTMLLNGALAGLVAITANPDAPSPVASSLIGI 318 Hahella chejuensis
WP_011049401 257 FNGGSQLYMDTAGNVADISRIFANTNTAAAGGAVAALLLTQLLYKKVDLTMVLNGALAGLVSITAEPLTPGLGSATLIGA 336 Ruegeria pomeroyi
WP_011370921 229 FNGGSELKISNVEEANAVSMIFVNTLLAAAAGVVGALLASKIKFGKADLTMMLNGALAGLVAITAEPLTPSALEATLIGL 308 Thiomicrospira ...
WP_011508452 229 FNGGSELMVSNIDSANNMAQVLVNTNAAAAGGVIAALILAKIWFRKADLTMALNGAIAGLVAITADPLSPTGLGATLIGA 308 Chromohalobacte...
WP_011589801 225 FNGGSVLATSSVGDSNAVAVVFMNTNAAAAGGAIAALIVGRILFGKADLTMLLNGALAGLVAITAEPSTPTALQATLFGA 304 Alcanivorax bor...
WP_011370763 231 FNGGSELMVSNVEEANAVATIFVNTNAAAAAGMIAAALLSKYMFGKTDLTMVLNGALAGLVSITAEPLAPTPGLAMFIGA 310 Thiomicrospira ...
WP_011457170 252 FNGGSQLAMGTIGDVADVSRIFANTNMAAASGAVAALILTQVMYGKVDLTMVLNGALAGLVSITAEPLAPSLFGALLTGA 331 Jannaschia sp. ...
WP_011567226 260 FNGGSQLAMGSVGDIADVSRIFANTNMAAAAGAVAALILTQVLYKKVDLTMVLNGALAGLVSITAEPLAPSLGLALLIGA 339 Roseobacter den...
WP_011041492 321 IAGVIVVMSILALD-KVKIDDPVGAISVHGVVGFFGLMIVPIT---N-----SSSSFSGQLIGAATIFVWVFVTSFIVWF 391 Colwellia psych...
WP_011187571 338 VAGILVVISIILLD-KAHIDDPVGAISVHGVSGIWGLLAVTIT---N-----PEASLIAQLIGITTIFSWVFITSIITWF 408 Desulfotalea ps...
WP_011400097 319 VAGVLVVFSIVTLD-KLKIDDPVGAISVHGACGLLGLLVVPFT---T------DVSFLAQLAGAFTIFGWVFTTSLVVWG 388 Hahella chejuensis
WP_011049401 337 VGGVIVVFAVPFLD-RLKIDDVVGAIPVHLMAGVWGTLAVCLT---N-----GDANLGTQLYAIVVVGLFTFVVSGAVWF 407 Ruegeria pomeroyi
WP_011370921 309 VGGIIVVAAILILDnKFKIDDPVGAISVHGVVGIYGLLAVTFT---N-----PDSSLVAQLIGIAAIFSWVFITSLIVWA 380 Thiomicrospira ...
WP_011508452 309 VGGLLVVISIVALD-KLKIDDPVGAISAHGVAGLWGVLVVPVT---N-----ASASFGSQIIGAVAIFLWCFIASLIVWL 379 Chromohalobacte...
WP_011589801 305 LGGVLVVFSILTLD-KMKIDDPVGAISVHGVVGFLGLMLVPIT---NpltddGGASFSGQLIGAVTIFAWVFVASLVVWG 380 Alcanivorax bor...
WP_011370763 311 VGGLIVVLSVVFMD-KLKLDDPVGAISVHGTAGIWGIFAVLFS---N-----ADATFFGQFVGTVATFAWMFITSIIVLY 381 Thiomicrospira ...
WP_011457170 332 VGGLIVVFTVPLLD-KLKIDDVVGAIPVHLFAGVWGTLAVAFY---T-----G--NWGAQILGIAAIGIFVFVTSLVVWF 400 Jannaschia sp. ...
WP_011567226 340 VGGVIVVFAVPMLD-KFKIDDVVGAIPVHGFAGIWGTIAVLFTgsyD-----GDATVGAQLLGIIAIIGATFVLSLIVWF 413 Roseobacter den...
WP_011041492 392 ALKKVIGIRVSAEEEYEGVDISDCGMEAYPEF 423 Colwellia psychrerythraea
WP_011187571 409 AIKKVMGLRISPEEEHEGVDLCECGLTAYPEF 440 Desulfotalea psychrophila
WP_011400097 389 LIKVIMGIRVSEEEEYEGVDLAECGMEAYPEF 420 Hahella chejuensis
WP_011049401 408 ILKMVMGIRVSEEEEINGLDMAELGMEAYPEF 439 Ruegeria pomeroyi
WP_011370921 381 IIKAVMGIRISEEDEFEGADQSECGMEAYPEF 412 Thiomicrospira crunogena
WP_011508452 380 ILKAVMGVRVSEEEEYEGVDLAECGLEAYPEF 411 Chromohalobacter salexigens
WP_011589801 381 ILKVVMGIRVSEEEEYEGMDIADCGMEAYPEF 412 Alcanivorax borkumensis
WP_011370763 382 IIDKTMGLRPTEEEEMEGMDMKECGMEAYPEF 413 Thiomicrospira crunogena
WP_011457170 401 ILKATVGIRVGEEEEINGLDVAELGMEAYPEF 432 Jannaschia sp. CCS1
WP_011567226 414 ILKATMGIRVSEEDEITGLDTTELGMEAYPDF 445 Roseobacter denitrificans
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