Conserved Protein Domain Family
HSDR_N_2

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pfam13588: HSDR_N_2 
Type I restriction enzyme R protein N terminus (HSDR_N)
This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.
Statistics
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PSSM-Id: 433331
Aligned: 30 rows
Threshold Bit Score: 88.0325
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Apar_1224    26 PEEKVRQRYVCTLVNDFGYQLEQMAQELKVTnSKr--gQ-GKAR--A-----DIVI---WKSTdekdesKS---AFIVVE 89  
WP_012627176     16 KEDSVREVLILPIIQRLGYTNTQVIRSKTLQ-HPfvkiG-SKKR--PvnivpDYLF---KIED-------S---YAWVLD 78   Cyanothece ...
CAS:pLAtc3_p01   44 PEEIVRQKFIRTLVEHYGYALEQMDQERRTQ-HG----H-KSPR--A-----DIVV---WQTAmekeagRT---PVLVVE 104 
WP_015905021     18 GPEESRQTFERFLVKEKGYDKHDIRVDEPIC-VTfqgeA-YHST--I-----DLVV---FCKD-------R---PVMAVR 75   Desulforapu...
WP_012609249     25 HDERYRQKIARILVEEKGYAKEDVRPRLDLM-AQa--gE-NRRQlmV-----DFAV---SV-D------GK---TAMIIR 82   Desulfatiba...
WP_012447274    526 HEEVVRQWVIEELINTLNYPLELIDIEYEIQ-LF----S-ATGY--V-----DIVV---FKNM------KGkivPYIFIE 583  Natranaerob...
jgi:Bcell_1150  525 KEEVVRQWLLKELVNTYGYPLELIKLEFPVQ-QF----S-KRGY--V-----DIGVsifVNGE------MV---PYIFAE 582 
jgi:Gura_3600    57 PEEAVRQLYVMVLKDDLDYPINRLSLEYDVT-RG----R-EKKR--V-----DICV---FDKD------KTt-tPYILVE 113 
ACH40244         59 PEEIVRQLWLYRLIHNYNYPVSRVTVEYPIT-FGr---D-TSKR--A-----DIVV---FDKDr------Pt-vPYLIVE 116 
Q5NL52           49 SEERTRQLWLSRLINKLGYAPSRIAVEYPIT-FG----RdSSKR--A-----DIVV---FDADr----pTV---PYIIIE 106  Zymomonas m...
jgi:Apar_1224    90 CKAENVKI-HVEDYYQGFNYAS-W--AHAQFFVTTNEKETKYFNVDPtyLPQ-KLEEVVGIP 146 
WP_012627176     79 AKAPTEAVtSDEHLDQVFSYAI-HpeVRAKFFSLCNGREFILYRQDD--KQPiLYFQLQDIE 137  Cyanothece sp. PCC 7425
CAS:pLAtc3_p01  105 CKTDTIEI-QERDYYQGESYTR-A--TGCEFFIATNARHTAVFKLVPg-LPG-GFVAINEIP 160 
WP_015905021     76 CIAGSLGS-YEREILAGARLVY-E--FQIPFSVATNGLDALMRDVVT--GKQ-RGKGLDALP 130  Desulforapulum autotrophicum
WP_012609249     83 YAPGSLIT-RHRPCIAAARLLE-P--YQVPFVVVTNGEDAQVLDVKT--GKV-IAEGLDSIP 137  Desulfatibacillum aliphaticiv...
WP_012447274    584 AKHYNTSL-DKQDVNQLKSYLEgN--SSVEYGMLTNGKDFKILKKQS--KKG-EFEYIDSLP 639  Natranaerobius thermophilus
jgi:Bcell_1150  583 IKRFGAGI-ES-GFAQLTSYIE-Ad-ASVRYGVVTDGLEIKCVDR--------QGEVLNDIP 632 
jgi:Gura_3600   114 LKKPKLKD----GKEQLKSYCN-F--SGAPMGVWSNGDSISFYH-RK--DPN-YFEPIPAIP 164 
ACH40244        117 VKKTKLKE-GK---EQLKSYCH-A--TGAPLALWSDGSLVTFWH-RK--NPN-YFVEIPEIP 167 
Q5NL52          107 VKQAKYKD-G---KEQLRSYTH-A--TGAPLAVWSDGILVEFWH-RK--NPN-YFMPIHELP 157  Zymomonas mobilis
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