1URD,1NL5,1EU8,1URG


Conserved Protein Domain Family
PBP2_ABC_oligosaccharides

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cd13522: PBP2_ABC_oligosaccharides 
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The periplasmic-binding component of ABC transport systems specific for maltose and related oligosaccharides; possess type 2 periplasmic binding fold.
This family represents the periplasmic binding component of ABC transport systems involved in uptake of oligosaccharides including maltose, trehalose, maltodextrin, and cyclodextrin. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270240
Aligned: 10 rows
Threshold Bit Score: 392.161
Created: 24-Mar-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1URD; the maltose-maltodextrin Binding protein of the thermoacidophilic bacterium Alicyclobacillus acidocaldarius in complex with maltotriose, contacts at 4A.
  • Structure:1NL5; Escherichia coli maltose-binding protein binds maltose, contacts at 4A.
  • Structure:1EU8; trehalose/maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis in complex with trehalose, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                             ##         
1URD_A         2 TITVWSwqtg--pelqDVKQIAAQWAkah-gdKVIVVDqssnp-kgfqfYATAARTGk-GPDVVFgmpHDNNGVFAEEGL 76  Alicyclobacillu...
1NL5_A         6 KLVIWIngdk---gynGLAEVGKKFEkdt-giKVTVEHpdkl----eekFPQVAATGd-GPDIIFw-aHDRFGGYAQSGL 75  Escherichia coli
NP_968138     22 RIQIWHqmiy--ghrqVLAEALEKFEkenpgiTVQATYretee-lrssfQSAAMGGS--GPELVYg-pSDQVGPFATMGI 95  Bdellovibrio ba...
ADN01962      35 LITLWTqegeaegafqFVQTLAQEFSeahegvTIEVLNkdtea--lredFQTASLAGa-APDLLWt-vNDHAGPFVVADL 110 Spirochaeta the...
ADO77243      42 TIKYWEsidat-ldsvLTDGLIKKFEskypniKVEATHqgved--lrqnTQTAYMGGq-GPDVVLs-pFDHIGPFSIMGL 116 Halanaerobium p...
1EU8_A         5 KIVFAVggap--neieYWKGVIAEFEkkypgvTVELKRqatdteqrrldLVNALRGKssDPDVFLm-dVAWLGQFIASGW 81  Thermococcus li...
1URG_A        31 TITVWSwqtg--pelqDVKQIAAQWAkah-gdKVIVVDqssnp-kgfqfYATAARTGk-GPDVVFgmpHDNNGVFAEEGL 105 Alicyclobacillu...
YP_001634133  53 TVTLWHaygtgsaeekAINMLIDRARaaypdaTINVLQipfdq-ifnkfNNEVSSGG--GPDMFIa-pNDSLGSQIRAGV 128 Chloroflexus au...
NP_342629     89 TITVWNsyst--senqAFNETLAQFEqafpwiHVQVTYgvgvg--tsqfETAAKAGQ--APIVYRd-tSDSGGALFAAGL 161 Sulfolobus solf...
ADN51371      98 TITVWNtysv--senqAFNASLASFEqlypciHVEVTYgvsia--tsnfISAAKAGQ--APIVYRd-tSDDAGKLFAAGL 170 Vulcanisaeta di...
Feature 1                                                 #                                      
1URD_A        77 MAPvpsgvlntgly------apntidaikvNGTMYSVPVSVQVAAIYYNKKLVp-----qPPQTWaefvk---------- 135 Alicyclobacillu...
1NL5_A        76 LAEitpdkafqdkl------ypftwdavryNGKLIAYPIAVEALSLIYNKDLLp-----nPPKTWeeipaldk------- 137 Escherichia coli
NP_968138     96 VRPldevlgsdyfq------nfdplaapvyDGKHYMIGDAVGNHLMLLYNKKFit----tPPKNSqelielgkkmtvdtn 165 Bdellovibrio ba...
ADN01962     111 IQPvenlvdls-----------kyvpsvemKGHVWGVPISSGNHLMLLYNKDLvp----nPPKTTdelikigs------- 168 Spirochaeta the...
ADO77243     117 AQPldnlmsdkmknk----yinsalagmslNGKNYGVPVTMGNHLMLMYNKNIvd----qPPATWedliaiaqentidqd 188 Halanaerobium p...
1EU8_A        82 LEPlddyvqkdnydls-vffqsvinladkqGGKLYALPVYIDAGLLYYRKDLLekygyskPPETWqelvemaqkiq-sge 159 Thermococcus li...
1URG_A       106 MAPvpsgvlntgly------apntidaikvNGTMYSVPVSVQVAAIYYNKKLVp-----qPPQTWaefvk---------- 164 Alicyclobacillu...
YP_001634133 129 LADlseyqskltdv------sptgvagmslDGKLYGIPESFKAVALYYNKSKVa-----nPPATTdellal--------- 188 Chloroflexus au...
NP_342629    162 VLNlsqylpqsitsl----yvptaikdwelNGSLYGLPDNVNYIVMFYNKKFVpy----pPNTTEqlvqiaes------- 226 Sulfolobus solf...
ADN51371     171 LLNlseylppsvfeqylptaaqnfylntpsAHGYYGLPDNINYIVMFYNKQYIt-----sPPNTTdqlinmclq------ 239 Vulcanisaeta di...
Feature 1                             ##                                                         
1URD_A       136 ---danahGFMYDqa----nlYFDYAIIGGYGGYVFKdnngtldpnNIGLdtp--gaVQAYTLMRDMvskyhWMTPStn- 205 Alicyclobacillu...
1NL5_A       138 elkakgksALMFNlq----epYFTWPLIAADGGYAFKygd----ikDVGVdna--gaKAGLTFLVDLik-nkHMNADtd- 205 Escherichia coli
NP_968138    166 gdgkidrwGLVFNyt----epFFFAPFIPAFGEAFLKadg---vtpNLNTta----lKDTFQFILKLrdqdkIIPKEcd- 233 Bdellovibrio ba...
ADN01962     169 qlkakgviPLVFNqt----epFWLVPWLGGFGGKVFAsd-----gvTPTLdtk--emVATLKFLHELkfthgLLPPEsd- 236 Spirochaeta the...
ADO77243     189 gdgladkyGLAYNln----epFWWITFQGGFGGWVFDee------yNPTLnte--atVDALQFAHDLkykyqIVPKEad- 255 Halanaerobium p...
1EU8_A       160 retnpnfwGFVWQgkqyeglvCDFVEYVYSNGGSLGEfkd---gkwVPTLnkp--enVEALQFMVDLihkykISPPNtyt 234 Thermococcus li...
1URG_A       165 ---danahGFMYDqa----nlYFDYAIIGGYGGYVFKdnngtldpnNIGLdtp--gaVQAYTLMRDMvskyhWMTPStn- 234 Alicyclobacillu...
YP_001634133 189 ---vkagnTLVLNqn-----aYHNFGWLQAFGGQLMDan------gKCIAdqa--ggAEWFAFLKALkevptVTFSTdg- 251 Chloroflexus au...
NP_342629    227 vnktyhvwGIAYGagd--eygYRFAAWFAGFGGQIFTtnn---gkiVPALnstamvnALNFWYNLTYnlkvnYLAPStga 301 Sulfolobus solf...
ADN51371     240 vnstyhvwCIAYGvgs--ewgYRFAAWFAGFGGQIFGpnnm-pqlnSSAMan---alEFWYNLTYGLh----INAPDmn- 308 Vulcanisaeta di...
Feature 1                               #                                                        
1URD_A       206 ---gsIAKAEFLAgkigMYVSGPWdtadie----kakidFGVTPWPtlpng-khatPFLGVITAFVNKe------sKTQA 271 Alicyclobacillu...
1NL5_A       206 ---ysIAEAAFNKgetaMTINGPWawsnid----tskvnYGVTVLPtfkg--qpskPFVGVLSAGINAa------sPNKE 270 Escherichia coli
NP_968138    234 ---yeTANALFKEnkaaMLINGDWswgdyq----qakvdFGIARIPmisetgkwpsPLVGTKGYSLNAnmk---seAHYE 303 Bdellovibrio ba...
ADN01962     237 ---ydGADTLFKEgkaaMIINGDWslsgyr---eamgdkLGVARIPkvsatglwpaPYTSGKYFMIPKev----sgAKLS 306 Spirochaeta the...
ADO77243     256 ---dkMADSLFKDgdvaFIISGDWiidsyq---qndnidLGVAPLPkfkktgkygqPMTSGKGFIMLRnl-----sQEKQ 324 Halanaerobium p...
1EU8_A       235 emteePVRLMFQQgnaaFERNWPYawglhnaddspvkgkVGVAPLPhfpg--hksaATLGGWHIGISKy------sDNKA 306 Thermococcus li...
1URG_A       235 ---gsIAKAEFLAgkigMYVSGPWdtadie----kakidFGVTPWPtlpng-khatPFLGVITAFVNKe------sKTQA 300 Alicyclobacillu...
YP_001634133 252 ----gQADSLFKDgkadMIINGPWvlgdyr---avlgdnLGVAPMPgaakp-agplTGVDGFYVSINS--------QNVA 315 Chloroflexus au...
NP_342629    302 ---ggAEGQLFVAnqtaIIFDGPWdlnayl---qalgpnLGAAPLPvvsqtglraaPFIGSTGFLVSSpqasgatpLQIK 375 Sulfolobus solf...
ADN51371     309 ---psLEGQLFTSgqaaIIFDGPWdlgtyf---kalgcnLGAAPLPvvsqtglhasPLIGSTGWVIASpqasgatpQQLE 382 Vulcanisaeta di...
Feature 1                                                                                     #  
1URD_A       272 ADWSLVQaltsaqaq--qmyfrdsqQIPALLsvqrssavqssptfkaf----------veqlryavpmpnipqmQAVWQA 339 Alicyclobacillu...
1NL5_A       271 LAKEFLEnylltdegleavnkdkplGAVALKsyeeelakdpriaata------------enaakgeimpnipqmSAFWYA 338 Escherichia coli
NP_968138    304 AAVKLLKyltstpvq--llfaekvgVLPSNLqaresdivknnpllkis----------adimevgtpmpvtpevRAVWDS 371 Bdellovibrio ba...
ADN01962     307 AVVEFIKyatnydnq--irmvktlsRLPGLKaalddplikndpilkas----------adqmavgtpmpsvvemRAVWDA 374 Spirochaeta the...
ADO77243     325 IAVLKFIdfmtdlaa--qelfvdsnFLPSNAqayqlpqiqndpimkgs----------skalrngrpmpvipemRGIWDA 392 Halanaerobium p...
1EU8_A       307 LAWEFVKfvesysvq--kgfamnlgWNPGRVdvyddpavvsksphlke---------lravfenavprpivpyyPQLSEI 375 Thermococcus li...
1URG_A       301 ADWSLVQaltsaqaq--qmyfrdsqQIPALLsvqrssavqssptfkaf----------veqlryavpmpnipqmQAVWQA 368 Alicyclobacillu...
YP_001634133 316 GAVALAMfltspesm--kvyvdeagHVPVSTkveisdplvqafaq---------------asatgvprpqipelDNYWGP 378 Chloroflexus au...
NP_342629    376 AALLFVLyftnyqad--lrlwevahDIPANLqaynealtqlkegmlqptylnqimegileqaqygqqfpnipqmAYYWNS 453 Sulfolobus solf...
ADN51371     383 AALVFILymtgpqad--lnlwnyahDIPANIqaynqavsqlkagqltpsclndimegifaqaqygqkfpnipamAYYWPA 460 Vulcanisaeta di...
Feature 1        #                         
1URD_A       340 MSILQNiiag-kvsPEQGAKDFVQNI 364 Alicyclobacillus acidocaldarius
1NL5_A       339 VRTAVInaasgrqtVDEALKDAQTRI 364 Escherichia coli
NP_968138    372 LRIQYQkvlagslqPQAAAEQAQITA 397 Bdellovibrio bacteriovorus HD100
ADN01962     375 MKPEMNavladqktPEEAAAAMQGAA 400 Spirochaeta thermophila DSM 6192
ADO77243     393 IRPALQsvmsddltPEAAAEQMQEEA 418 Halanaerobium praevalens DSM 2228
1EU8_A       376 IQKYVNsalagkisPQEALDKAQKEA 401 Thermococcus litoralis
1URG_A       369 MSILQNiiag-kvsPEQGAKDFVQNI 393 Alicyclobacillus acidocaldarius
YP_001634133 379 FGDAMTkvldggadPAAAVAEACALM 404 Chloroflexus aurantiacus J-10-fl
NP_342629    454 FHQYASeffankvnATQASQGMEQAF 479 Sulfolobus solfataricus P2
ADN51371     461 FHQYATayfanqttAQAAAQGMEQYM 486 Vulcanisaeta distributa DSM 14429

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