Conserved Protein Domain Family
PRK00783

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PRK00783: PRK00783 
DNA-directed RNA polymerase subunit D; Provisional
Statistics
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PSSM-Id: 234837
Aligned: 67 rows
Threshold Bit Score: 303.345
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
218884674   1 MHIDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRLGLIPLKSNeaLNKYKPPE 80 
171186411   2 PAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLAHRLGLIPLTTP--LQSLPPIE 79 
126460700   2 PKVSIVEKSQFFAKAVVEGVPPSLINSLRRVIISELPVLAIDSVVVVNNTSVMYDEMLAHRLGLIPLTTP--LKDLPPIE 79 
145592521   2 PRVSIVEKSQLFLKAIVEGVPPSLVNSLRRVIISELPVMAIDTVVVVNNTSVMYDEFLAQRLGLIPLTTP--LHSLPTYE 79 
18312091    2 ARATVVERGEYFLKAVVEGVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHRLGLIPLTTP--LQSLPPYE 79 
119872211   2 PKATIVEKTPLFLKAVIEGAYPSLVNSIRRVIISELPVMAIDYVVIVSNTSVMYDEMLAHRLGLVPLTTP--LQALPPIE 79 
146304892   1 MPIQVLKKENYFLSILTKDYPLEFVNSIRRASMLYVPVMAVDEVYVIENNSPLYDEMLAHRLGLIPFDSKdaLDYYRRPE 80 
124027415   2 ARLCILDKDRLTIRLYVEGFGLPLVNAIRRAAYSDVPVMAVDVVEVFENNTVLYDEIIAHRLGLIPLTSKeaLQKYKRPE 81 
118431575   7 RSVEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRLGLVVLDSNeaVEKYRRPE 86 
302348806   4 QKVSIVELGNSRITVSMEGFPVAYGNALRRLALSEVPTMAVDFVYFYDNESSVYDEIIAHRLGLLVLRSDeaLRKYGSPE 83 
218884674  81 ECAEAGDRgifsqdcFVTLRLEASgpekDVLTVY--SRDLVSSDPDVVPVYGEIPILKLIKDQSIRLEAYARLGRGKEHI 158
171186411  80 DCESGLADps---ecTVRFTLQVNa--dGEVTVY--SGDLVSERPDVVPVHKDIPIVKLVKGQSIVLEAYAKLGRARGHA 152
126460700  80 DCESGLVDps---ecTVRLTLQVNa--tGDVVVY--AGDLVADRPDVAPVYKDIPIVKLVEGQSVVVEAYAKLGRARDHA 152
145592521  80 ECATGVADpt---ecGTRLVLQVTa--dGDVTVY--SGDLTSERPDVVPVYKDIPIVKLVKGQSIVIEAYAKLGIAKDHA 152
18312091   80 DCVSGLADps---ecSTRLTLQVTa--eGDTTIY--SGDLASDRPDVVPVYKDIPIVKLVKGQSIVLEAYAKLGVAKDHA 152
119872211  80 DCETGLVDps---ecTVRLMLQINa--eSDKIVY--SGDLVSERPDVVPVYKDIPIVKLVKGQSIILEAYAKLGRAKEHA 152
146304892  81 ECIECTENcd---rcFTKAYIDVKae-dSQVMVY--SRDIRTEDPNVTPISKDIPIVLLGKNQKVTLEMKMRLGYGKEHA 154
124027415  82 ECEKAELGdp---scYVVLRLEVEtgprEERIVY--SGDLETSDPDVRPVYDNMPIVVMAPDQRLRLQAYARLGYGREHA 156
118431575  87 ECAGKEPSee---dcFVEVSLEAEvdaeGETGRYitAGDLSISDPQVKPVYPETPLIYVAPGQRIHVQAFARLGRGKEHT 163
302348806  84 ECSNASENds---hcFAQVYLEYEvpqdAASGVYvkASDLKFSDPDIRPIYPETPIVYLAPGQRIHLVGYARLGRGYEHG 160
218884674 159 KWSPVSTAAHKYVPAITIdSEKCkgAECSRCVNACPKNIFEAGN---NSVRVKedKILECTFCR--LCENI-CPTQAVKV 232
171186411 153 KWQAALAS-YYYYPRVEVrDESC----RERCREVCRD--------------LT--NPLECTFNKamTCRDL-CGDK-LHV 209
126460700 153 KWQAALAS-YYYYPKVVVkREEC----REMCKEVC--------------RNLE--NPLECTFNKatTCKEM-C-GGGIVV 209
145592521 153 KWQAATAS-YYYYPKVIIkDEKC----REICKEICPD--------------LE--DPVKCTFNKawTCKDL-C-KGGLDV 209
18312091  153 KWQAATAS-YYYYPKVVVkSENC----REMCKEICRQl----------------eNPIECSFNKawTCKDL-CKEG-LEV 209
119872211 153 KWQAALAS-YYYYPRIKVlDEKCkeECKDICKELT--------------------NPFECTFNKawTCRDI-C-GDRLIV 209
146304892 155 KFNPVSLAILRYKPKVEVn------KDCEKAVEVCPERVFSFEN---GKLKVV--NEMACTLCE--ECVKA-CEG--INV 218
124027415 157 KWMPVSVAAHRYLPILEFnLDEMsdECIRCIESGYPELAAKIREmrsGSIAVV--EDVNTSGLY--WCVQRrCGGKGVKL 232
118431575 164 KWSPASLSVLRYTPILIYdSSKAg-DECLECLSAYPQVVEALKSggkGSLVLE--GLRRTSGLR--YCAET-ACRGAVEV 237
302348806 161 KWSPASVAVLRYSVHVEYdPSKVt-SECLECISAYQDLVGAIKGgsaGRLELNy--kVNTSALR--YCEEE-SCKGAIKV 234
218884674 233 SWRENEYILYLELTGALNARNILIEAINILSRKLDAFIDELRRNG 277
171186411 210 DWERNKYVFWVESFGNYDVDTALREAFRILKRKYSLFLDALARKS 254
126460700 210 EWEKDKYVFWIESFGNYDAETALREAFRILKKKFEDFLDALSRKA 254
145592521 210 EWEKNKYVFWVESFGNYGVDVALKEAFRILKRKFEAFTEELVKKA 254
18312091  210 TWDKNKYVFWVESFGNYDVNTALREAFRILKRKFAVFAEELFRRA 254
119872211 210 EWDRYKYVFWVESFGNYDVETALREAFRILKKKFSDFITTLTQKA 254
146304892 219 SPEPNQYILEIESVGSLEPRRILIEATKSILSKIEELKKKVEGL- 262
124027415 233 VYDDKRFILKIESTGALPPEDIVREAARAIVRKAENLLSQLAELR 277
118431575 238 RYDSSNLDLEVESTGALRPEKIVELAIRELEEKVKRFAEAVESVG 282
302348806 235 VYDPSKLYLTVESTGALEPARIIWEATNCLARKADKLLKELEEAQ 279
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