Conserved Protein Domain Family
Glyco_tran_WbsX

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cd11579: Glyco_tran_WbsX 
Glycosyl hydrolase family 99-like domain of WbsX-like glycosyltransferases
Members of this domain family are found in proteins within O-antigen biosynthesis clusters in Gram negative bacteria, where they may function as glycosyl hydrolases and typically co-occur with glycosyltransferase domains. They bear resemblance to GH71 and the GH99 family of alpha-1,2-mannosidases and may share a similar cataltyic site and mechanism. The O-antigens are essential lipopolysaccharides in gram-negative bacteria's outer membrane and have been linked to pathogenicity.
Statistics
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PSSM-Id: 211420
Aligned: 137 rows
Threshold Bit Score: 286.356
Created: 7-Feb-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligandputative
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:by similarity to other members of this family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #             #  #                                                     
P0C7J1        90 ATLVAFYLPQFHPIPENDAWWGKGFTEWRNVSRTLPQFeGHQQPRLPADLgFYDLRTPDVMREQARLAQEYGLGAFCFYF 169 Xanthomonas cam...
ACA24831       6 YKVFPFYFPQFYATKENDMWWGKGFTDWELVKKAQAVHqSQSQPRIPLNG-YYDQSDPVVIKKQSKLASEYGIDGFNFYH 84  Escherichia coli
ADJ79085       1 MKIIAFYLPQYHEIKENNEWWGEGFTEWRNIKNSKPYFkGHNMPRRPLNDnYYNLTDVKTLLWQKNLAKKYGIYGFAYYH 80  Lactobacillus s...
YP_001879843   1 MKVIAFYLPQYHVIPENDKWWGEGFTEWTNVKRAVPLFsGHNQPRIPLNNnYYNLLDKNTLIWQAGLANQYKIGAMCFYH 80  Shigella boydii...
ZP_04108475    1 MKTIAFYLPQFHEIPENDLWWGKGFTEWTNVKKAKPRFlGHYQPRAPLGDyYYNLLNLDVHKWQINLAKQYGLDGFCYYH 80  Bacillus thurin...
AFA48876       2 SKIIAFYLPQFHSIPENDEWWGKGFTEWTNTKKAMPLYkNHYQPKLPYGNnYYNLLNKETRLWQAKLAMEHGVYGFCYYH 81  Acetobacterium ...
ZP_02643758    4 PKVIAFYLPQFHAIPENDEWWGKGFTEWVNTKKAKPLFeGHQQPKTPLNDnYYCLLDAETQEWQAELAEKYGVYGFCYYH 83  Clostridium per...
ZP_08616878    1 MKVIAWYLPQFHETPENNEWWGEGFTEWTNVKKGVQLYpDQYQPRVPLNNnYYNLLDKKVLEWQVELAKKHGIYGFCMYH 80  Lachnospiraceae...
CAI33488       2 VKKIAFYLPQFHTIPENDKWWGKDFTEWTNVKKSQPQYrGHIQPEVPLNEeYYNLLDTEVQEKQAKLALEYGIDGFCYYH 81  Streptococcus p...
ZP_03390611    1 MKYIAFYFPQFHSIEENNRWWGHQFTDWELVQAAQKYTeEQRQPRIPLNNnYYDLTEAEVIAWQTQLAKKYGLGGFNFYH 80  Capnocytophaga ...
Feature 1        #                             #                                                 
P0C7J1       170 YWFAGKTLLEMPITQWHadtsITLPFCLCWANEKWARRWDGrgh--dvlIDQAHSADDDLAFIAHVARYMRNPKYLRVGD 247 Xanthomonas cam...
ACA24831      85 YWFDGTVLLDKPMQNLYndksIDIEYFFTWANETWTRQWVGrpqdllikQEHKVDINIWNEHYEYLRKFFLDDRYLKINN 164 Escherichia coli
ADJ79085      81 YWFEGEMLLEKPAEIMLxhpeVDMPFCFSWANHTWSRVWADktnb-ilkLQKYGDEKDWKXHFDYLLPFFKDKRYIKEDG 159 Lactobacillus s...
YP_001879843  81 YWFLGKQLLEKPAEILLenkeINMPFLFSWANEPWTRAWDGshrn-vlmPQSYGTEADWEKHFNYLKPFFEDERYLKHDG 159 Shigella boydii...
ZP_04108475   81 YWFKGKKLLEKPVELRNqckeIDFPYCLCWANESWTRSWDGkdke-vliRQEYGDESDWKEHFNYLLPFFKSENYLTIKD 159 Bacillus thurin...
AFA48876      82 YWFNGKMLLNKPLEEVLklnePELPFCMCWANEPWTRTWDGgene-ilmPQYYGNRDDWQKHFEYLLPFFKDSRYITVDE 160 Acetobacterium ...
ZP_02643758   84 YWFNGKMLLEKPMENMLnnknIKLPFCISWANEPWARTWDGknke-vlmSQVYGEEKEWKEHFDYLSKFFVDDRYIKIDN 162 Clostridium per...
ZP_08616878   81 YWFDGKLLLEKPIELYLenkdLDLPFCLCWTNDKWTNTWKSddpk-iliDQTYGDKEMWKKHFDYFLPFFKDSRYITKDG 159 Lachnospiraceae...
CAI33488      82 YWFDGKLLLEKPMENMLqnenITLPFCICWANESWSRTWDGaeskvlimQNYSDTLDGWKRHFDYLLPFFKDERYIKVDE 161 Streptococcus p...
ZP_03390611   81 YWFDGKLLLGKPMELFLanpnNDLNFCITWANETWTKQWIGssei-lmeQKHLNDKDLWQQHFDYLLPFFKDPRYITIDQ 159 Capnocytophaga ...
Feature 1              #                                                          #              
P0C7J1       248 RPLLLVYRPHLLPEpvQTAARWRNWCRDnGIGEIHLAYVQgfe---rpDPRDIGf-----DAAVEFPPNmstppsvtarq 319 Xanthomonas cam...
ACA24831     165 SPVLCIYRPELVKSlsEWVAFFNNKAKCdGFNGIHFIALRays---iaNADSVYky---fDKIVNFQPRfainthlkkss 238 Escherichia coli
ADJ79085     160 RPVMIJYNPLGVKEfpEMMKXWQZWAKKaGLPGIFFLHQQne----ydHSREPGge--lfEGGVEYQLNravveyirksl 233 Lactobacillus s...
YP_001879843 160 KPIFIIYRTANFALcnEWISCWRELSKNtSFKDIHFVSSYtsf---enDPRKLDf-----DAHLYFEPMctvghnlgyfn 231 Shigella boydii...
ZP_04108475  160 KPIFVIYRPASIPNlnKMLNLWNEWAQSeGLLGIHFVEMLti----feNKSDFPf-----DAAIEFEPMytlkklignt- 229 Bacillus thurin...
AFA48876     161 MPLFLIYKTSLIENcdEMIKYWNELGVKnGLKGIYVAEELtg-----fQLKPCCke---tRAVVEFEPTytirenadifs 232 Acetobacterium ...
ZP_02643758  163 KPLMLIYRTSNIPKcdEMIECWNNECKKlGFDGIYLVETMn-------SFQNKScvn-ksDAVVEFEPMltirhhlpihi 234 Clostridium per...
ZP_08616878  160 KPMLGIYVPQVIPClkEMIDFWQEEAKRhGFPGLCLFYENllwnhtkeDLSPFF------DYEVAMEPAeqmavvrrern 233 Lachnospiraceae...
CAI33488     162 KPMMIIYKPQLIENleEMTVYWNQLAKQnGFKGIHFGHQHv------sSFEDSKvie-nfDFGIEFEPIytvsemhkstr 234 Streptococcus p...
ZP_03390611  160 KPVFCIYRPELNKHqtQWMNFFNQKAREnGFEGIYFIGMKs------yDLDREDevyssfQAKMLFQPRylfnkkffqrk 233 Capnocytophaga ...
Feature 1                                                                            #           
P0C7J1       320 ----------------------------rlvnpdfsgdVLDWRELARDMEqrp--lrdYTLYPGVNPGWDNEPRRSgKGR 369 Xanthomonas cam...
ACA24831     239 plkkliestlr-----iapewlqlqlvriiknkratynQYKYSDYIQSMKndvteykgKPVYPVVFPDWDNAPRYKeNAT 313 Escherichia coli
ADJ79085     234 tfkfeal-------------gsriadkipalickstikHYSYDDIWKIILkqk--pkgKDWYPGSFVDWDNTPRRKnRGS 298 Lactobacillus s...
YP_001879843 232 kkikkin-------------arlkrvinqkfgttyvenTLQYDYLWEKILkkk---inKTQYPGAFVDWDNSARKKsRAL 295 Shigella boydii...
ZP_04108475  230 ----------------------------nslqqekkdfHLSYDFVWKRILsrqi-kerENIYKGAFIDWDNSPRKKeSAL 280 Bacillus thurin...
AFA48876     233 rlilk-----------------ikyllrkkivsgklirFYDYDYIWNKIIkrkrkvidKKVFLGAFIDWDNSARKKyEAI 295 Acetobacterium ...
ZP_02643758  235 qg------------------------vryfkkklgvldKLNYDNLWNAVInkne-dygKKKFLGAFVSWDNTARKKnKGL 289 Clostridium per...
ZP_08616878  234 gklfkikslipgwvfkvfekimfylmehvsrkldeqapSFSYEDIWKRVVeks--pknEKEIPGAFSDWDNTVRKGkRGT 311 Lachnospiraceae...
CAI33488     235 skseklkra---------iknpkwfsrnishkyfgrslLFDYDEVWSAILrre---grKNISPGAFVSWDNTPRRGnRSL 302 Streptococcus p...
ZP_03390611  234 swvsaiekklr------rlpekmqfwigrlkfkmeksqKVDYVAFGEALLtlaq-qtqDKTYQSIIVDWDNTPRYKnRSK 306 Capnocytophaga ...
Feature 1                                              # ##                       
P0C7J1       370 IYLHASPRRYRDWLARTVQhrlanapsAHRMVFINAWNEWAEGAVLEPDARlGYAWLDATRQALT 434 Xanthomonas campestris pv. cam...
ACA24831     314 FFCESSAYGFEKALNIACDitr---nhDDKLIFINAWNEWSEGAYLEPDEMhKYSSLEIIKKVFQ 375 Escherichia coli
ADJ79085     299 FCDGTSPEKFEYYLTQQIKrar--nvyHKDYLFMFAWNEWGESGYLEPDTKnGYKMLEAVKNALI 361 Lactobacillus salivarius CECT ...
YP_001879843 296 VIHGGSPKKFGLYLDKLYKrsi---enNCPFLFINAWNEWAEGTYLEPDEKnKYSYLEELKKVIE 357 Shigella boydii CDC 3083-94
ZP_04108475  281 ILKGANPDKFKKYLLQHSK--------DTDFLFINAWNEWAEGTYLEPDSKyGYKYLEALMDIKK 337 Bacillus thuringiensis serovar...
AFA48876     296 IFKGASPQKFEKYIKKQLMvak---elNSEFVFLNAWNEWAEGTYLEPDQKyGYAYLEAIKEAQN 357 Acetobacterium woodii DSM 1030
ZP_02643758  290 VLNEDSPSKFKKYFKKQYDkai---eiGSEYIFINAWNEWAEGTYLEPDKEnEHGYIEALNEVLN 351 Clostridium perfringens NCTC 8239
ZP_08616878  312 YLSNPDPEIFKKYFRELVKkak--seyKKDMIFFFAWNEWAESGYLEPDEQfGYSYLENIRDVLV 374 Lachnospiraceae bacterium 1_4_...
CAI33488     303 VFDGANPKKFEKYFAKQVQrak--eeyHSDFIFINAWNEWAEGAHLEPDEQyGYGYLEAVRAVKE 365 Streptococcus pneumoniae
ZP_03390611  307 FFVNATPANFEHFLKELSLiea---akGNEFVFINAWNEWSEGAYLEPDTTyEYQYLDVVKKLSE 368 Capnocytophaga sputigena Capno

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