1LFW,3KHX,3KHZ


Conserved Protein Domain Family
M20_PepV

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cd03888: M20_PepV 
Click on image for an interactive view with Cn3D
M20 Peptidase Xaa-His dipeptidase (PepV) degrades hydrophobic dipeptides
Peptidase M20 family, Peptidase V (Xaa-His dipeptidase; PepV g.p. (Lactobacillus lactis); X-His dipeptidase; beta-Ala-His dipeptidase; carnosinase) subfamily. The PepV group of proteins is widely distributed in lactic acid bacteria. PepV, along with PepT, functions at the end of the proteolytic processing system. PepV is a monomeric metalloenzyme that preferentially degrades hydrophobic dipeptides. The Streptococcus gordonii PepV gene is homologous to the PepV gene family from Lactobacillus and Lactococcus spp. PepV recognizes and fixes the dipeptide backbone, while the side chains are not specifically probed and can vary, rendering it a nonspecific dipeptidase. It has been shown that Lactococcus lactis subspecies lactis (L9) PepV does not hydrolyze dipeptides containing Pro or D-amino acids at the C-terminus, while PepV from Lactobaccilus has been shown to have L-carnosine hydrolyzing activity. The mammalian PepV also acts on anserine and homocarnosine (but not on homoanserine), and to a lesser extent on some other aminoacyl-L-histidine dipeptides. Also included is the Staphylococcus aureus metallopeptidase, Sapep, a Mn(2+)-dependent dipeptidase where large interdomain movements could potentially regulate the activity of this enzyme.
Statistics
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PSSM-Id: 349884
Aligned: 27 rows
Threshold Bit Score: 506.398
Created: 16-Jun-2005
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
metal bindingactive site
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 6 residue positions
Conserved feature residue pattern:H D E E D HClick to see conserved feature residue pattern help
Evidence:
  • Structure:1LFW: Lactobacillus delbrueckii PepV binds two Zn(II) ions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1LFW_A         7 ELAEAKK------DAILKDLEELIAIDSSEDLenateeYPVGKGPVDAMTKFLSFAKRdGFDTENFAnyAGRVNFGAGd- 79  Lactobacillus d...
NP_814887      5 EEIAAQK------DLFYEDLNKIIAIRSVKGSpk--keAPFGEGPKRALEETLKLAERyGFQTGIVNdaVGYAQWGTAe- 75  Enterococcus fa...
YP_807901      8 AMYDTHR------DEFLAALRQVMAVKSVRGQqa--ehAPFGSGPRAVLTAVAQLGAAyGFKTAVVNdaMAYVQWGEDdq 79  Lactobacillus c...
EBA39203      10 EYVDEVW------EDVVADIEQLVSYPSVAVAadaepgAPFGRPVRDALDCALGIAQKlGYQTSDDDgyVGIADIPGRgd 83  Collinsella aer...
EDN02010       6 EQIRAYFddpakqRELVAAVCRLVSIRSVRGEaq--pgMPFGEGPARALDEALKLCDElGFATKNHDgyVGTAELNDKd- 82  Bacteroides cap...
CAJ69994       7 LIIDYLKsn---qENIINDIRSLVEIPSIRDEsttdinQPFGIEIRNAFDKLIQIAKDkDFVVKDFDgyAVHIEYGEGe- 82  Clostridium dif...
CAJ69377       9 AESKKYE------KEFLKLLEQWVSIPSFYDRktvskdMPFGKGVYDALNWFENLGREnNFKVKNIDnhAVQIEYGNGk- 81  Clostridium dif...
CAJ67113       2 DISRSVDns---lNRTIEFLKELIKIDSQQGEpi--sqCPFGIGPKKSLDKTLDYCASlGFSVKNIDnyIGYAEIGEGe- 75  Clostridium dif...
EDM87889       7 EEIHGLT------DEILTNLERLVAIDSQLGTps--egKPFGEGPAKVLEEALKIADElGFKTVNLDnyCGYAEMGEGe- 77  Ruminococcus ob...
YP_001089004   9 AESKKYE------KEFLKLLEQWVSIPSFYDRktvskdMPFGKGVYDALNWFENLGREnNFKVKNIDnhAVQIEYGNGk- 81  Clostridioides ...
Feature 1               #                                 #                                 ##   
1LFW_A        80 KRLGIIGHMDVVPAG--EGWTRDPFKMEIDeEGRIYGRGSADDKGPSLTAYYGMLLLKEAGfKPKKKIDFVLGTNEETNW 157 Lactobacillus d...
NP_814887     76 EYLGIIGHLDVVPEG--SGWSVPPFQLTKK-NQRLYGRGILDNKGPILACLYGMKLLKELGyQPKKTIRLMFGTDEESGS 152 Enterococcus fa...
YP_807901     80 HYIGIVGHLDVVPAGd-ADWHFPPYALSEK-DGRLYGRGVLDNKGPSMACLIGMKLLKDAGfQPKKTIRLIFGSDEESGS 157 Lactobacillus c...
EBA39203      84 KQLATICHVDVVPAG--PGWNTDPFAMERR-EGWLLGRGVIDDKGPAVLSLYAGAYLLKHGiVPRYTFRALLGCDEEVGM 160 Collinsella aer...
EDN02010      83 TILHILAHMDVVGEG--KGWDTDPYGPVEK-DGVLYGRGVADDKGPAVAALFAMKCVKDLGiPLNHSARMILGTDEESGS 159 Bacteroides cap...
CAJ69994      83 EVVGVLNHIDVVPIYnkELWKSKPFKVCQK-DNYLYGRGVNDNKGPLIGILYALLFLRELNeKPKRKIRLIVGGAEETTW 161 Clostridium dif...
CAJ69377      82 EYVDIFGHCDVVNPG--EGWDSEPFKLNII-GDKLVARGVSDNKGPMIVNFLALKMIKDLDiNLKRKVRLIAGGNEESGF 158 Clostridium dif...
CAJ67113      76 ELIGIPMHLDIVPPG--EGWSVDPFSGAVI-DNIIYGRGVIDNKGAVSMLIHVLKNIEDMYpTINKRIRLIFGTNEETGM 152 Clostridium dif...
EDM87889      78 EIVGIAGHLDIVPVG--GDWTYDPFKLTRE-GDHVYGRGTTDDKGPVLEALYAMKLLRDSGvKLNKRVRLIMGCNEETGS 154 Ruminococcus ob...
YP_001089004  82 EYVDIFGHCDVVNPG--EGWDSEPFKLNII-GDKLVARGVSDNKGPMIVNFLALKMIKDLDiNLKRKVRLIAGGNEESGF 158 Clostridioides ...
Feature 1                            #                                                           
1LFW_A       158 VGIDYYLKHEp-tPDIVFSPDAEYPIINGEQGiftLEFSFKNDDtkg-dyvLDKFKAGIATNVTPQVTRATIsgpdleav 235 Lactobacillus d...
NP_814887    153 GDIPLYLEKEn-aPVFGFTPDCKYPVVYGERGivnYEITTTIPDdss--eqIGQIIGDQAKDHVPDQLSVVIa------- 222 Enterococcus fa...
YP_807901    158 NDVPLYLASEa-pPEFGFTPDCKFPVVYGERGivnYRITTPIATtsi--kqIGTIAGDQTRDHVPDKLTVAVd------- 227 Lactobacillus c...
EBA39203     161 SDVHHYLENHa-dPDFLFTPDAEFPVCNAEKGqfgATFVSPKIDgg----rIVSWSGAEASNAIPSQSICELaiaadelp 235 Collinsella aer...
EDN02010     160 EDIAHYYATEp-yAKYTFSPDADFPVINIEKGhyhPDFGSTWAKaev-lprVTGLKGGFRTNVVPPEAEAVVagvsaadv 237 Bacteroides cap...
CAJ69994     162 ECMEHYFSVNe-qPKFAFSPDGNFPIVNGEKGilyFNLRKKIDKdkfrnhnLVDIKSNKEDGFVCDKIEAVFktndkkdl 240 Clostridium dif...
CAJ69377     159 KCIKHYYSKEp-yGVCGFTPDAKFPVLNGEKGgaiIKLISNIDDk------SLYISGGIEFNTIPDKVYIKNveklgkdn 231 Clostridium dif...
CAJ67113     153 KCIKYYLDKGeeiPSMGFTPDAMYPVVNGEKGrvhIRIEKEIKIdks--kpYIIVSGGTKENVVPSHCTAKIing----- 225 Clostridium dif...
EDM87889     155 KCMEHYNEVAe-eVSCGFTPDANFPCIHGEKGm--VMMTAYSKNt-----rIISMNGGFVSNAVCDTCNTVVpaeaglke 226 Ruminococcus ob...
YP_001089004 159 KCIKHYYSKEp-yGVCGFTPDAKFPVLNGEKGgaiIKLISNIDDk------SLYISGGIEFNTIPDKVYIKNveklgkdn 231 Clostridioides ...
Feature 1                                                                                        
1LFW_A       236 klayesfladkeldgsfeindesADIVLIGQGAHASAPQvGKNSATFLALFLdqya----------fagRDKNFLHFLAE 305 Lactobacillus d...
NP_814887    223 ----------------------gKTTAITGKRAPSNAPElGKNAITLLAQKIseeq---------lvkgNLLQYFDWLTA 271 Enterococcus fa...
YP_807901    228 ----------------------gQPITANGIRVPTNAPEkGVNAITELAKKLvteq---------lvtgELASYCQWLID 276 Lactobacillus c...
EBA39203     236 apven-----adrleitaldnghAQIFAHGIGGHASMPEgTINAVGLIVAYLreaedafgarderlltpAEHEFVKFLAF 310 Collinsella aer...
EDN02010     238 eaaarqtaeetgaaftveetdggVHVHCAGKNAHAASPDgGNNAITALLTLLdrlp---------lagcGSTAAIKSMHT 308 Bacteroides cap...
CAJ69994     241 vesla------yyteieeldegkVLVRYTGERALSRNPHrSYNCAFSLAKDLeki-----------kklNDKGVIIRDIL 303 Clostridium dif...
CAJ69377     232 icf---------dinnisinydnGNYIVYGKGGHSSKPEkSINPILATIKLLse--------------nIDEKWTKDLYK 288 Clostridium dif...
CAJ67113     226 ---------------------iiSELTTKGVAVHASNPEkGENAISKMVIKIvedn----------mdfQHREDIELVSK 274 Clostridium dif...
EDM87889     227 kleaala-etklqeykiteengeISIYAKGVPAHASTPTlGVNAAGVTFECLak-------------agFEDDFVKFYNE 292 Ruminococcus ob...
YP_001089004 232 icf---------dinnisinydnGNYIVYGKGGHSSKPEkSINPILATIKLLse--------------nIDEKWTKDLYK 288 Clostridioides ...
Feature 1                                                                                        
1LFW_A       306 VEhedf--ygkkLGIFHHDDlMGDLASSPSMFDYEHAgkASLLNNVRYPQgtdPDTMIKQVLDKFsg--iLDVTYNGfe- 380 Lactobacillus d...
NP_814887    272 SFhekh--ygegVALDFKDQdSGQLILTPYALEKRGQq-LVLSLAVRYPVsitENEVTTQLTKALfp--eSEVTVIRrl- 345 Enterococcus fa...
YP_807901    277 SLaekh--fgegLGMAFEDAdSGRLIVTPYSLQKTDDa-MTLGLAMRYPVtyhEADVSKALAAAVpa--gSQITIVRsm- 350 Lactobacillus c...
EBA39203     311 VHaday---grgLGIDATSPaFGPLTCNAGLIRVADGh-IEQVIDVRFPDstsADTIREQLDPLVg---rFGVTCRVgra 383 Collinsella aer...
EDN02010     309 LFphgdt-rgkaLGIAQEDElSGPLTLNLALMTLDETg-FSAKFDVRFPIcanEDNCKKACEASFa---aHGISVTGdgd 383 Bacteroides cap...
CAJ69994     304 NSyftddnhgkkLGMYKEDVdMGVSTICIMSIFLEKNe-LNMKIDFRYPKgisWEFITNRINEIGk---kENLIVDIykd 379 Clostridium dif...
CAJ69377     289 LInqdni-ngnlFGLNIEGK-CGILSMVPTIINIVDGk-LEVVLSVRYPEiltIEDIIKKFNLYMeqnniNKFELIGenl 365 Clostridium dif...
CAJ67113     275 YLcsdy--ygdaLGINQYDEvFKNTTLNLGILKVNEEk-IVCELDIRYGKnivLNNIIDRFKKVFcn--gWKIEVIAhk- 348 Clostridium dif...
EDM87889     293 HIgtac--dgsgLGLKFEDE-YGELTLCNGIVKTEDGv-VSCTIDIRVPVtlkGDEVRKMCEDKLe---dENGRIEIhmi 365 Ruminococcus ob...
YP_001089004 289 LInqdni-ngnlFGLNIEGK-CGILSMVPTIINIVDGk-LEVVLSVRYPEiltIEDIIKKFNLYMeqnniNKFELIGenl 365 Clostridioides ...
Feature 1                                                                          #             
1LFW_A       381 --ePHYVPGSdPMVQTLLKVYEKQT-GKPGHEVVIGGGTYGRLFERGVAFGAQPEN-----GPMVMHAANEFMMLDDLIL 452 Lactobacillus d...
NP_814887    346 --pSTLFPKDeRNVQKLTKVYEQIT-GLDGTPVTTTGATYARFMPNIVAFGPSFPG-----QKGIAHNQDEYMDEKDLLL 417 Enterococcus fa...
YP_807901    351 -pgVLHDKHD-PRIAQLTQAYEKMT-GNDGTPVTTTGATYAREMPNIIAFGPSFPG-----QKGIAHKENEWMDEADLKL 422 Lactobacillus c...
EBA39203     384 -kvPFSVSADdPAVKALIDTYNEFT-GKHAEPFAMGGGTYARNFARAVSFGPEETGlelpaWGGQMHGPNECANEEQLKQ 461 Collinsella aer...
EDN02010     384 mttVHHTDANsPFVRTLLTCYENYTgVKDAKPLAIGGGTYVHDIPGGVAFGCELPG-----SDPRMHGPNERIPVADLVL 458 Bacteroides cap...
CAJ69994     380 -lkLLYVKPDsELINKLSNAYKQGF-GKEAELFTKGAASYARVLKNGVAFGPTIEG-----DNPNSHQANENISIDTLYK 452 Clostridium dif...
CAJ69377     366 -kqANYIDRNsKLVRSLHDIYIKYSgDLKNDVRVTSAGSYASEMNNSVIFGCEFPDg----SFGNVHSANEFASLDRFIT 440 Clostridium dif...
CAJ67113     349 --dLHYVDESnLVLKKLLEAYEEVT-DENGYTIAMGGGTYASWFKDMVAFGPKFLA-----YKTGGHGVDERVPINHIRK 420 Clostridium dif...
EDM87889     366 -gdSLFFPREsPLVNALYKAYVDVTgDTENKPMVIGGGTYAKSLKNIIAFGPEMPG-----IDYRIHGADEFILVSGMEE 439 Ruminococcus ob...
YP_001089004 366 -kqANYIDRNsKLVRSLHDIYIKYSgDLKNDVRVTSAGSYASEMNNSVIFGCEFPDg----SFGNVHSANEFASLDRFIT 440 Clostridioides ...
Feature 1                    
1LFW_A       453 SIAIYAEAIYEL 464 Lactobacillus delbrueckii subsp. lactis
NP_814887    418 NLEIYMQAMIAL 429 Enterococcus faecalis V583
YP_807901    423 NMMIFMDAMIGL 434 Lactobacillus casei ATCC 334
EBA39203     462 ALKIYIVAILRL 473 Collinsella aerofaciens ATCC 25986
EDN02010     459 SCKIFAQAIAEL 470 Bacteroides capillosus ATCC 29799
CAJ69994     453 AIEVYIYALYSL 464 Clostridium difficile 630
CAJ69377     441 AIGIYAEAIITL 452 Clostridium difficile 630
CAJ67113     421 NMEIYTLALIKL 432 Clostridium difficile 630
EDM87889     440 AVLVYMEAIKNL 451 Ruminococcus obeum ATCC 29174
YP_001089004 441 AIGIYAEAIITL 452 Clostridioides difficile 630

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