Conserved Protein Domain Family
NapF_like

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cd10564: NapF_like 
NapF, iron-sulfur subunit of periplasmic nitrate reductase
This family contains NapF protein, the iron-sulfur subunit of periplasmic nitrate reductase. The periplasmic nitrate reductase NapABC of Escherichia coli likely functions during anaerobic growth in low-nitrate environments; napF operon expression is activated by cyclic AMP receptor protein (Crp). NapF is a subfamily of the beta subunit of DMSO reductase (DMSOR) family. DMSOR family members have a large, periplasmic molybdenum-containing alpha subunit as well as a small beta FeS subunit, and may also have a small gamma subunit. The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.
Statistics
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PSSM-Id: 319886
Aligned: 120 rows
Threshold Bit Score: 129.286
Created: 15-Jan-2016
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Fe-S cluster
Feature 1:Fe-S cluster binding site [ion binding site]
Evidence:
  • Comment:predicted based on similar proteins.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #      #### ##   #   #              # #      #  ####  #   ##  ##         
KLV11052   20 RLPWMVNDDIFTDGCTRCGKCAAACETQIIIh---------GDGGFPEVDFKRGECTFCYRCADVCPEPLFHPQtt---- 86  Photobacterium gan...
CAG22205   49 RPPGAVEEGVFLQLCQSCNYCETACVQQVIE----------MVEGRPQLNLDYNHCTQCGECQKACLSGALSSKn----- 113 Photobacterium pro...
KJG37398   35 RPPTAVDEDIFKRLCTQCGQCRTVCPEHVII----------FKDGYPVINIEYSACTLCFKCKAVCPTNALSNL------ 98  Photobacterium ang...
EKB24113   27 RPPWAIEESQYLTLCTRCGECFKACPRGLLKpatleeyegsPIAGTPVLDLACGQCSYCGSCARACPTGALDLQlg---- 102 Aeromonas veronii ...
ACH64444   50 RSPYAIEEGLFRELCQDCEQCAAVCPQHVIE----------MVDARPQLNLDYNHCTFCGECQLVCDSGALGKDl----- 114 Vibrio fischeri MJ11
KQN67879   47 RPPQAVAESLFIQRCSGCGNCTQACPVGMLH----------LQEGKPALSIEYADCDFCGACTQACETGALDASvr---- 112 Serratia sp. Leaf51
GAL09755   59 RPPKALDETLFLQICDGCGTCATSCPEQVIE----------VVEGKAQLNLDYGYCSQCGGCNQVCPTGALHGSi----- 123 Vibrio sp. C7
EMD79711   35 RPPHAVDEALFVRLCDGCGECLKVCPNSVIE----------LDAQLAQLNLNYNQCSLCSECVKACPSDALHASvp---- 100 Vibrio alginolytic...
GAB52198   45 LPPGASSATQFLTACTRCGQCADACPMGVIIq---------REDGYPQLAIEFASCDGCGQCIEACTTDVLQHQa----- 110 Escherichia herman...
KMV31653   17 RPPGAIEEVLFQKICTGCTECELACPETIIH----------VESGLAQLDIDYGYCSMCGECQKACPTGALHAKklqdkq 86  Photobacterium swi...
Feature 1           #               ####   ### ##               # #####  #   #    #     
KLV11052   87 pAWAMVAEIGEG--CLAYqhVECRSCGDMCETQAIRFRLqpggvAQPELEATNCTGCGACVSVCPTSAITVVNP 158 Photobacterium ganghwense
CAG22205  114 nDIGLRPSFSKG--CTNRlsGECLICVDACPQQAISVSSr----QLPVIDTAVCSGCGQCRSACFIGAVQLEWQ 181 Photobacterium profundum...
KJG37398   99 -LNDTGLRVHITntCINEy-VYCNECETSCPVSALQWQDk----QIPTIDHDKCIGCGLCKNDCYIEAITMQEE 166 Photobacterium angustum
EKB24113  103 rQVQTRVQIEES--CQARqgFYCLLCEDACPQQAIKATA-----DGINVNMDACNGCGACGLACLHGAITLIRQ 169 Aeromonas veronii AMC34
ACH64444  115 gIINLQPEFISS--CNNKlsGGCEVCADACPQKAIIIEPr----KLPQVDASLCNGCGLCRSACFIGAVQMTFA 182 Vibrio fischeri MJ11
KQN67879  113 aDTGLRPVHLPQ--CLGRmdDMCRMCEIACPRTAIFFNQq----NQPSVDDEKCDGCGKCKLVCYHGDIRLSLN 180 Serratia sp. Leaf51
GAL09755  124 sDLAMRPVFSMS--CQNAifGDCYLCKEPCQTNAITITDy----ELPRVDNSKCDGCGRCKQSCPFSAIQIDYV 191 Vibrio sp. C7
EMD79711  101 lDINLRPDFTQS--CDNYlqTECQQCASACPQHAISVQDd----ELPHINNELCNGCGQCRISCYSNAILMKLY 168 Vibrio alginolyticus E0666
GAB52198  111 -HFDTRLRPSFStqCTHAs-RGCRQCATACPVQACAFTEs----ALPVVNNERCNGCGECMIQCDRQAITLAQC 178 Escherichia hermannii NB...
KMV31653   87 nDTELRPSFSTN--CQNRlfGECELCAEQCPHQAISIADf----CLPELDQAKCDGCVRCKQACPFSVITMNLL 154 Photobacterium swingsii

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