Conserved Protein Domain Family
P2_N

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pfam18628: P2_N 
Viral coat protein P2 N-terminal domain
P2 (30.2 kDa) is the major outer-coat protein of the marine lipid-containing bacteriophage PM2. Each sub-unit of P2 is composed of two beta barrel jelly rolls, disposed normal to the surface of the capsid, which lend pseudo-6-fold symmetry to the molecules, facilitating their close packing within the capsid. There is a Ca2+ ion located between the two beta barrels of P2 that helps PM2 molecular organizations stabilization. This entry represents the N-terminal jelly roll domain of P2.
Statistics
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PSSM-Id: 436633
Aligned: 18 rows
Threshold Bit Score: 129.319
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011829437    3 PIRLPQLQNVGPNQRVSLSLPLGVTYQKLYFQLGTNi-lTSLITNIVLKLNNKEFARwKTAADLIAHNAYKGnYTGSTAF 81  Methylibium pe...
SOA:S7S_09315   5 PREVKSFDGVGWGQKPQVKLAGGPTYHEIVFETNLL---PEQIVMATLWLNGDPIVQ-MTGQQMVMLERYKK-HWEEPGR 79 
Q87PD9         15 PRELDPVEGVNWGNQATLRLVSGPTYQNIELVTDILd--PADIERIAVKVNGREIVN-VTGQDLIDLQEHKK-EYVQAGR 90  Vibrio parahae...
WP_046075852    7 PKELDPVEGVYWGRQAHLRLVTGPTYQQIELVTNITd--PADIDYVRLTLNGSPVVD-VTGQDLVDIQEHRG-NYVEDGR 82  Salinivibrio s...
GAL24985       20 RQEIDRWENIRAGGEAILTIPVGPTYWAIEFILKRLa--LTDIEYFQFKLNGRPHIH-VTPQEMKKLALEAG-IHWDDAR 95 
WP_044623331   12 PKELDPVEGVGWGNRASLRLVSGPTYHSIELVTDITd--PNDIERVEVSLNGSAKIN-VTGETLVKLQAHRK-NYAQPGR 87  Photobacterium...
WP_009600635    4 PTKLNSFTGADYGEKATLTIPIGPTYEELFLETNLS---AAQLKRVTISLNADEIIV-LDGELIKKLEAYKG-LASTEGF 78  Vibrio caribbe...
EAT13377        5 NLKLNSFSGVGAGQTASLVVANGPFYQDIYLKFSGS---IAELEAVTVKLNTVELFT-LSGTQIRMIDSYYG-NTTTAGY 79 
Q1H2P8          5 HIKLPSISRVVAGSTAVLEIPIKPTYHNILFSVTGTgldVTDIGKIRVLANGKEVQTfASLQRLFDLNAYYGrSPDTVNQ 84  Methylobacillu...
WP_015817232    5 DVRMPSAASVQAGSTALFKLPIGRRYHDLTLEYSGVt--LAQMTEIRILVNGKPFQR-FSATWRDAKNQFDR-LAAANGL 80  Teredinibacter...
WP_011829437   82 LVIDFTERLAREEAALTLGTVAATQea----gVQQFTLEFDLGNytAVAA--Si--ITGWADVE 137 Methylibium petroleiphilum
SOA:S7S_09315  80 FVMPLADISGASLEGQSLSALPTFP-------ADNLILQVQVAQepAPNTq-GsvaLKADAWVS 135
Q87PD9         91 YVLNFSDMTMRTKLGIRTGELVTLQ-------GEIWFMYIQLKAktGTAAp-M---IRARAHTT 143 Vibrio parahaemolyticus
WP_046075852   83 YIIPFADLGMKTKQGIRHGELVTLP-------GELWMMYIQLKNkdGDAAppS---IEARAHTT 136 Salinivibrio sp. KP-1
GAL24985       96 PTLYFGDPSMLTWEGQFLKTMVTKV-------TDTWKCYVRIKS--GVSNp-E---ITSNALTT 146
WP_044623331   88 YVISFGDATLRTKIGVRQTDLVTLA-------GEIWFVYITLKSkpAGTTapS---VRARAHVL 141 Photobacterium gaetbulicola
WP_009600635   79 FTIPLSDITAKTKNGVRYTGLVTES-------GDNITLEVEIAPasQENAp-Kv-qLQAWASVS 133 Vibrio caribbeanicus
EAT13377       80 YRLPLSCAHVKDLERRVQTGLPTFN-------GDNLVIEVKIAA--GATAp-T---LEAFAEVR 130
Q1H2P8         85 FMIHFTDNAYDQLAYKRAPAFGTDD-------LQTFTVELELAAgaPADI--T---MKAQAFID 136 Methylobacillus flagellatus KT
WP_015817232   81 LKIPFDRLGLKRRDQIEQTAVNTDSydqngrgIRSFSVEIDIAP--EAAAp-V---MEMSARQS 138 Teredinibacter turnerae
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