Conserved Protein Domain Family
YciV

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COG0613: YciV 
5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain [Nucleotide transport and metabolism]
Statistics
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PSSM-Id: 440378
Aligned: 835 rows
Threshold Bit Score: 50.2931
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015358557  19 A---LkelyrlylegkitkdaVdfeyVNNHIHTTYS-FS-P--------YSPAKALWMAFKSGLQTAGIMDHDSVGG--- 82 
WP_012862840  95 yknpY----------------K----GDLHMHTNRS-DG-L--------ECPEYVALNMRKMGFDFIAITDHRNYNA--- 141
WP_041730795   1 ---------------------------MAHVHTTFS-DG-T--------ATVPELLAAARGSGADAVLLTDHDTLAA--- 40 
WP_013841915   3 H---Y----------------S----GVVHIHTCYS-DG-S--------SDFSGIARAALKSGAHFVLVNDHDTLAG--- 46 
WP_068136998  10 LgpfLadphag-----pgldrK----AQLHVHTARSrDA-R--------TPALEMLAAYRSQGFSFVVITDHDRPGLpp- 70 
WP_047862137  49 W---V----------------R----GAFHVHTVRS-DG-R--------GTVEEVAAAAKAAGLHFVVLTDHNDFPL--- 92 
WP_106053510  11 T---F----------------K----AGLHTHSTVS-DG-Q--------FPPQEVIRRYADHGYRALALTDHRKTHP--- 54 
WP_015797055   1 -mttV----------------R----AVAHIHSEWSdDA-S--------WPLDRLAAAFRKRGRSVLLMCEHSRTFTeak 50 
WP_108383770   1 ---mF----------------T----LDLHTHSRFF-HGfEsrptafdpVGARLIDAVARGHGLDGVALTNHDYNPD--- 53 
WP_106053766 119 gllpF----------------K----GDFHVHTLRS-DG-K--------ESPAYVAARYREAGFDFLAISDHHRYEP--- 165
WP_015358557  83 ---V---FEF-IEAG--Ki--lNMATTVGMELRIDmSgtslkDkrinnpdqkgiaYVAMHGIPhtQlGrV-ESfikpyqe 150
WP_012862840 142 ---S---LEA-VESF--KniksDFLILPGEEVHPP-------Dny---------vHIINFGgKe-S---I-NEkmkdeet 191
WP_041730795  41 ---R---HDG-WE-G--Wh--dGVLLVVGVEVSPP-T-----G------------HYLAFGVE--Q-E-V-AHd------ 79 
WP_013841915  47 ---L---YRE-GE-K--Yl--hGVLVLVGSEITPQ-R-----N------------HFLCYDVQ--R---VpSN------- 84 
WP_068136998  71 --gLppgPDGg-HLA--G----ECLVLPGEEat---------------------iPNPFWP-Lgphllrilatrp----- 114
WP_047862137  93 ---R---EPA-Fv--------eGVLLVPGVELSTA-H-----G------------HLVAFGLW--R-P-L-EGfq----- 129
WP_106053510  55 ---V----------GcyDs--cGMTLIPGIEIHPQgPr----Gip---------wHLLSLGVp--E-------------- 90 
WP_015797055  51 wdeYv---QAcA-AA--Sg--dGVLVVPGLEYNDSd------Nv----------vHIPVWG-D------Vpfl------- 92 
WP_108383770  54 ---L----SFd-----------GIVTIPGIEISTT-Q-----G------------HVLVIGADp-P---T-AT------- 85 
WP_106053766 166 ---S---LEA-IDYW--RrhptGLTLLPGEEVHPP-------Ecp---------vHMLNFGgRf-S---V-NAlfredea 215
WP_015358557 151 arnirnramveningimnkyGisldfdkdivpvsmahdggtiterhllyalsekitamtgkgtktvnfirndlqiplspk 230
WP_012862840 192 yrkeveeii----------------------------------------------------------------------- 200
WP_041730795  80 --------------------G----------------------------------------------------------- 80 
WP_013841915  85 --------------------K----------------------------------------------------------- 85 
WP_068136998     --------------------------------------------------------------------------------    
WP_047862137 130 -------------------kG----------------------------------------------------------- 131
WP_106053510  91 --------------------Gfpa-------------------------------------------------------- 94 
WP_015797055     --------------------------------------------------------------------------------    
WP_108383770  86 --------------------Dpg--------------------------------------------------------- 88 
WP_106053766 216 kfrrevear----------------------------------------------------------------------- 224
WP_015358557 231 leaylsdegnpfyeydllgvlkshmvekfyipatsecPPVEAFIEICKETGAIPAYAYLG-DVgdsvtgdKK-Sqkfedd 308
WP_012862840 201 ----------------------qnledfpefidkyvyASCVWCFEKIRESGGLSIFCHPF-WI-------TKnIyn---- 246
WP_041730795  81 -------------------------------------RSPLEIAKAVRAAGGVGFAAHPF-SR-------GSrMlv---- 111
WP_013841915  86 -------------------------------------ISPREYVRKVYRQGGFGFLAHPD-QKenplfp--------akm 119
WP_068136998 115 -------------------------lrrrrlrrrdarRDLEQALAATAAEGGLCGLAHPGwRG-------NLeTg----- 157
WP_047862137 132 -------------------------------------MDGGEAEAAVEKAGGVSVLAHPV-QK-------RNpWr----- 161
WP_106053510  95 -----------------------------------eyASGQEAVDAVNAAGGIVFEAHPY-WCg---------------- 122
WP_015797055  93 ----------------------------------sqtPDIADVLAHTRAADGVAVFAHPW-RRnaw-------------- 123
WP_108383770  89 ------------------------------------aMTPEAVIDLAAERDCATIIAHPF-RDs---------------- 115
WP_106053766 225 ---------------------ipslgpvasgvnpfavAATEWVFDKVREAGGLAVFCHPY-WD-------VRrRnv---- 271
WP_015358557 309 yiDL--L----FEE-Lk---------rLGFK-AVTYMPS--------RNT---------KEQ-----LR----K---VK- 341
WP_012862840 247 vpLN--L----VDYmFe---------kKPFC-AFELLGG---------HE---------TES-----NNl---Q---TAy 281
WP_041730795 112 ----paL----ARRvVpphgwaalaldGGTD-GIELWSV--------TTDg--------AEAwrtpaEAvrwmRdpvAAt 166
WP_013841915 120 hwDHwnVd-------------------MEMHyGLEIWNFfaqwmgsfQSVsgliknilfPKAflkppNP----K---TLl 173
WP_068136998 158 ------LwrpeVVDgL-----------PGIR-LIEVWNP--------HSDt-------gKDEaf--wHR----E------ 192
WP_047862137 162 -----------HEEaA-----------RRAD-GFELYSA----------------------------DTf--fRd--AMr 186
WP_106053510 123 ------Ft---AAElMt---------lKGVC-GIEVYNT--------STRyi------gKAY-----NM----Qiw---- 156
WP_015797055 124 ---------rrFDPaWa----------KDLT-AVEIWNR--------KYDgw-------------apNR----Q---AR- 154
WP_108383770 116 -----------TVRgVd----------APFD-AVEL-NG--------KH----------PRN-----RA----F---VE- 141
WP_106053766 272 lsGA--L----VDEvFk---------rRKFD-ALELIGGf------wKHQ---------SES-----NAl---Q---VAr 309
WP_015358557 342 -------------AL--CEEYE--MFQIS---GEDINt---P-RQkficeaL 369
WP_012862840 282 y----------nnSR--EKQQK--IPIVG---VSDAHg---I-Hns----yA 308
WP_041730795 167 ddgppahhlrawdEL--SARRR--VPALG---GLDGHap-gV-Rl------D 203
WP_013841915 174 e----------wdRL--GEKRP--VPAIA---GVDAHg----gRN------L 198
WP_068136998 193 -------------ALlrGPEAP--VWASA---GDDSHe---P-Gh------V 216
WP_047862137 187 ------------nPF--SRL----LPAVGasfGNPVHgvmlL-AE------P 213
WP_106053510 157 ------------dEL--LDA-GcrCSALA---VDDMHr---ScDl-----fR 182
WP_015797055 155 -------------AY--AERLG--LPPFV---ALDFHgarqffplameltlt 186
WP_108383770 142 -------------RI--ARERE--IPIVG---GSDAHy---P-VE------V 163
WP_106053766 310 w----------meER--AAGAD--YPVVG---LSDSHg---T-DVgg---lF 337
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