1FFT


Conserved Protein Domain Family
Ubiquinol_Oxidase_I

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cd01662: Ubiquinol_Oxidase_I 
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Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.
Statistics
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PSSM-Id: 238832
Aligned: 42 rows
Threshold Bit Score: 718.978
Created: 15-Sep-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Putative ubiquinol binding site [chemical binding site]
Evidence:
  • Structure:1FFT_F: putative ubiquinol binding site
  • Comment:Proposed as ubiquinol binding site by authors of 1FFT structure paper, but none of these residues is highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              #   #  ##                  #  ###                        
1FFT_F       48 WLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALAsageagflpphHYDQIFTAHGVIMIFFVAMPFVIGLMNLVV 127  Escherichia coli
ZP_00089468 138 ALSAVNHSSIGLRFMVTGTLFFLIGGLLAMLLRVQLARPdlpl---idprTYSQLFTMHGSVMMFLFAVPMVEGLAVYLI 214  Azotobacter vin...
YP_157109    25 AATIVNHTRIGLLFLLTGLGFFIFGGLLAMLIRAQLALPdqtf---mdadTYNQVFTMHGTVMMFLFAVPMMEGLAVYLI 101  Azoarcus sp. EbN1
NP_437488    30 LVTAVNNTVIGLLYLGVAFLFFLMAGLLAVVMRTQLALGdnrl---vdqdLYNQMFTVHGTTMMFLFAVPAVEALGVMLL 106  Sinorhizobium m...
YP_159601    92 AVTVINNNYIGVFYVGAAFLFFVLAGIVALMMRTQLAVAendf---igpaLYNQLFTMHGTVMMFLFAVPAVEAMGILLL 168  Azoarcus sp. EbN1
NP_866086    21 YWSAVNNSEVGLWYTLTAFGFFLFGGVLALIMRVQLALPdndw---ltpdQYNQIFTMHGSVMMFLFAVPILEAISIMLL 97   Pirellula sp. 1
ZP_00207660  30 YWSAVNNTEVGVWYALTALAFMLCAGVLALLMRVQLAVPhndf---lsadRFNQFFTMHGSAMMFLFAVPMFEAISIILL 106  Rhodobacter sph...
NP_109481    23 ALSTVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPearf---igpdRYNQIFTMHGSNMMFLFAVPVMQAMAIYLV 99   Mesorhizobium l...
ZP_00519622  30 WLSETNHKEIGRRYILTAFVFLLMGGVEALLMRLQLAKPentf---lsagRYNQIFTLHGTTMMFLFAVPVMEGMGVYLV 106  Solibacter usit...
ZP_00033916  43 WFSAIDHKIIARRFMVTTFVFFVLAGLMALVMRTQLARPashv---vgpdMYDQLFTIHGTAMMFLFAVPVMQAVAMYLI 119  Burkholderia fu...
Feature 1                                                                                       
1FFT_F      128 PLQIGARDVAFPFLNNLSFWFTVVGVILVNVSLGVGefaqTGWLAYPPLSGieyspgvGVDYWIWSLQLSGIGTTLTGIN 207  Escherichia coli
ZP_00089468 215 PKMLGARDLVFPRLSAFGYWCYLFGGVILVSSLALGlapaGGWFMYVPLSGdahspgvNPDFWLLGITFVEISSVAGGIE 294  Azotobacter vin...
YP_157109   102 PKMLGARDLVFPRLSALGYWCYLFGGLILAASLFLElapdAGWFMYTPLSSlpyspgvNSDFWLLGITFVEISAVTAAVE 181  Azoarcus sp. EbN1
NP_437488   107 PQMLAARDLPFPRLSAFAIWAYVVGGLVFFSTIFYDlapkGGWFMYPPLTLmeyspgdNADFWLLGIGFIEISAIAGAVE 186  Sinorhizobium m...
YP_159601   169 PNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGwapdGGWFMNPPLTTetyspgyNADFWLLGIGFIEISAIAGAIE 248  Azoarcus sp. EbN1
NP_866086    98 PQMLGARDLPFPRLSAYGYWCFLIGGVFVCGSLFFGvgprGGWFMYPPMTTeyq-dgiGPDIWLLGLSFIEIASIAAAVE 176  Pirellula sp. 1
ZP_00207660 107 PSLLGARDLPFPRLSAYGYWCFLIGGVFVLGSILFDaaprSGWFMYPPLATqde--glGSDIWLLGLSFIEVASIAAAVE 184  Rhodobacter sph...
NP_109481   100 PLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDtgpdIGWFAYVPLSGpqyaagkRADIWAQMITFTEVSALAIAVE 179  Mesorhizobium l...
ZP_00519622 107 PLMIGTRNVAFPRLNAFGYWMYLAGGLLLYGSVLFNmipdAGWFAYPPLSGpqfspgkGVDVWAQMITFTEISALCVAVE 186  Solibacter usit...
ZP_00033916 120 PLLIGARSVAFPRMNAYAYWVFLFGGLTLFIAFLLGagprSGWFSYVPLAGpdyatgkGSDIWAQMITFTELAALLVAVV 199  Burkholderia fu...
Feature 1                                                                                       
1FFT_F      208 FFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNd-mGGNMMMYINLIWAWGHPE 286  Escherichia coli
ZP_00089468 295 LVVSILRSRAPGMSLDRMPLFAWYILVTGLMIVFGFPPLILGSILLELERAAGFAFFDVa-rGGDPLLWQHLFWLFGHPE 373  Azotobacter vin...
YP_157109   182 LVVAILRARAPGMTLQHMPLYAWYILTMAMMIVLGFPPLILGSILLELERAAGMAFFDVa-rGGDPILWQHLFWLFGHPE 260  Azoarcus sp. EbN1
NP_437488   187 IVVGALRTRPPGMSLAKMPIFAWTMLIFASMIMFAFPAVILATMMLEIERAFGWPFFTAa-lGGDPLLWQHLFWFFGHPE 265  Sinorhizobium m...
YP_159601   249 IIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPAVILATALLELERAFHWPFFAAh-lGGDPLLWQHLFWFFGHPE 327  Azoarcus sp. EbN1
NP_866086   177 LIVGVLKCRPPGMRLNLIPLYAWYILVVAVMILFAFPPLIAGDLLMELERAMDWPFFDVe-rGGDPMLWQHLFWIFGHPE 255  Pirellula sp. 1
ZP_00207660 185 LIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEMERGFDWPFFDPe-rGGDPLLWQHLFWIFGHPE 263  Rhodobacter sph...
NP_109481   180 IVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVGTHFFNPa-eGGDVLLWQHLFWFFGHPE 258  Mesorhizobium l...
ZP_00519622 187 LIVTILKMRAPGMSLNRMPMYCWSMLVQSFMIIFAMPAVMLASTVFLLNDRTLGTHFVNpaeGGDPLLYQHVFWFFGHPE 266  Solibacter usit...
ZP_00033916 200 LITTILKMRAPGMSLNRMPLFAWATLVTQFMVIFAMPAVMLASTALILDRLVGTQFYNPs-lGGDVLLWQHLFWFFGHPE 278  Burkholderia fu...
Feature 1                                                                                       
1FFT_F      287 VYILILPVFGVFSEIAATFSrKRLFGYTSLVWATVCITVLSFIVWLHHFFTMGAganVNAFFGITTMIIAIPTGVKIFNW 366  Escherichia coli
ZP_00089468 374 VYIIFLPAAGIVSTLLPVFArRPAVGYRWLVLAVIGTGFLSFGLWVHHMFTVGIpllGQAFFSAASMLVAVPTGIQVFAW 453  Azotobacter vin...
YP_157109   261 VYIIFLPAAGLVSTMLPVFArRPIVGYRWVVVAVLTTGFISFALWVHHMFTVGIphlAQAFFSAASMLVAIPTGVQVFSW 340  Azoarcus sp. EbN1
NP_437488   266 VYIIFLPAAGLVSMMVPTMArTPLVGYHLIVVALIGTGFFSFGLWVHHMFTTGIpalSLAFFSAASMAVAVPSGIQVFSW 345  Sinorhizobium m...
YP_159601   328 VYIIFLPAAGMVSMIVPTMArTPLVGYRFVVLALVGTAFLSFGLWVHHMFTTGIpqlSLSFFQAASTAVAIPSGMQVFAW 407  Azoarcus sp. EbN1
NP_866086   256 VYIVFLPSIALIAMMVPTFArTPMAGYGWIILAAVGTGFLSFGLWVHHMFTTGLpgiSIGIFSAASEAVAIPTGVQIFCF 335  Pirellula sp. 1
ZP_00207660 264 VYIIFLPSIALAAMIVPTAArTPIVGYSWIVLSAVGTGFISFGLWVHHMFTTGLpalSLGFFSAASEAVVIPTGIQLFAF 343  Rhodobacter sph...
NP_109481   259 VYIIFLPAVGMVSSIVATFTqRPVFGYLAMVMALIATGVLAFGLWVHHMFVAGLprlGESFFTASSMAIAVPAGLQIFCW 338  Mesorhizobium l...
ZP_00519622 267 VYIIFLPALGMISSILETHTrRHIFGYPALVLSLVGNGFIAFGLWVHHMFATGLpqiGEAYFTAASMMIAITSGVQIFCW 346  Solibacter usit...
ZP_00033916 279 VYLIFIPALGFMSSIIETFSrRPIFGYSAMVLALIATAFLAFGLWVHHMFATAVpdlGKTFFTAASVMIAVPSGIQIYCW 358  Burkholderia fu...
Feature 1                                                                                       
1FFT_F      367 LFTMYQGRIVFh----SAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVfGCFAGMTYWWPK 442  Escherichia coli
ZP_00089468 454 LATLWTGRPLFn----VPMLWLAGFLVIFVAGGLTGVMLALVPFDWQVHDTHFVVAHMHYVLVGGMLfPLVAGLYYWLPH 529  Azotobacter vin...
YP_157109   341 LATLWLGRPVYh----VPMLWLFGFLVIFVAGGLTGVMLALVPFNWQVHDTQFVVAHLHYVLVGGMFfPLVAAVYYWLPH 416  Azoarcus sp. EbN1
NP_437488   346 IATIAAGRERFri--tTASLFILGFLFIFTLGGLTGVMVAMVPFDHQVHDTYFVVAHFHYVLIGGFVfPLFAAIYYWMPL 423  Sinorhizobium m...
YP_159601   408 IATFARGRATGrvriaTPTLFILGFLFIFVLGGLTGVMVAVIPFDWQAHDSYFIVAHLHYVLVGGMVfPLFAAFYYWMPY 487  Azoarcus sp. EbN1
NP_866086   336 IATLLVGRVQRn----ACLKFVLAGLATFIIGGLTGVMVAIAPFDYQAHDTYFIVGHLHYVLIGGTIfPIVAGFYYYYPF 411  Pirellula sp. 1
ZP_00207660 344 VATLMVGRVKMi----LPMLWIAGGLAVFTAGGLTGVMVAIAPFDWQVHDTYFIVAHLHYTLFGGMVfPVIAGVYYFYPV 419  Rhodobacter sph...
NP_109481   339 LATIWAGRPIFk----TPFLFVIGFIVVFVIGGLTGVMVASVPFDTQVHDTYFVVAHFHYVLVGGAVfPLLGAIYYWFPK 414  Mesorhizobium l...
ZP_00519622 347 LATLWSGRLRLt----AAVHFVLGFIFIFVMGGMTGVMLASIPLDLQTHDTFFVVAHFHYVLIGGALfPLFGGFHYWFPK 422  Solibacter usit...
ZP_00033916 359 LATLLTGRLNLk----PPLLFVLAFFFILVLGGMTGIMLGSVPLDLQVHDTYFVVAHLHYVLLGGAVfPLFGAFHYWFPK 434  Burkholderia fu...
Feature 1                                                                                       
1FFT_F      443 AFGFKLNETWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLsqqi-dpqFHTMLMIAASGAVLIALGILCLVIQMYVSIr 521  Escherichia coli
ZP_00089468 530 FSGRLPSAQLGRWGFWLTFVGFNATFLVMHWTGLLGMPRRVytyqaglgWDLPNLVSSVGSFVMAMGVVMVLLDIGLHFr 609  Azotobacter vin...
YP_157109   417 FSGRMPSPRLGRWGFWLVFGGFNLTFLVMHWTGLLGMPRRAytyapglgWDVPNLVSSIGSFIMAIGIATVLVDVLLHFr 496  Azoarcus sp. EbN1
NP_437488   424 FSRRMLSERLGRWVFWLIFIGFNVTFLPMHLTGLRGMPRRVwtypgemgWDTLNLISTVGTYVLAVGVLVFLVDLAAKFr 503  Sinorhizobium m...
YP_159601   488 TSRQALSERLGRWVFGLMFVGFNITFFPMHFTGLAGMPRRVytyaagygWESLNFVSTVGAFMIAAGVLIFIIDVARRFr 567  Azoarcus sp. EbN1
NP_866086   412 VTGKRLSERLGNITFWLMLIGFNVAFFPMHIAGLMGMPRRVytfpggmgFELPNLISSIGAFGLGAGFLVLLWDVFRPKg 491  Pirellula sp. 1
ZP_00207660 420 IAKKTLSERLGRWSFWLLFTGFNVTFLPMHLTGLKGMPRRVftypghvgWDWLNLVSTVGAFVMAAGFAVFVWDLLRPKr 499  Rhodobacter sph...
NP_109481   415 LTGRMMSETLGRWSFGLIFSGFNLTFFPMHILGLQGMPRRIytyqpempWSGLNMFISLSGIVLAAGFLLFFIDAIRSAr 494  Mesorhizobium l...
ZP_00519622 423 FTGRLIDETLGKLSFWILFVGFNLTFFPMHWLGIVGMTRRVytyvpglgWEQANLTATIGAFVILSGGVTFIANVLRSRr 502  Solibacter usit...
ZP_00033916 435 FTGRMLGERLAHWQFWLFFIGFNVTFFPMHLLGLHGMPRRVwtypagmgWDGMNLIATLGAYMIGVSVLLFIVNVVMSLr 514  Burkholderia fu...
Feature 1                                      
1FFT_F      522 drdqnrdltGDPWGgrTLEWATssppPFYNF 552  Escherichia coli
ZP_00089468 610 fgr---ragDNPWRadSLEWATalppASYNF 637  Azotobacter vinelandii
YP_157109   497 fgv---raaPNPWHadTLEWATrlppTAYNF 524  Azoarcus sp. EbN1
NP_437488   504 lgn---gpqENPWGagTLEWLPn---DVYST 528  Sinorhizobium meliloti 1021
YP_159601   568 msa--ednaGNVWQagTLEWLPn---GNYSN 593  Azoarcus sp. EbN1
NP_866086   492 kqp---fvpRNIWNagTLEWSGevpdLPWGI 519  Pirellula sp. 1
ZP_00207660 500 ak----lseRNPWGagTLEWTHdledESWGV 526  Rhodobacter sphaeroides 2.4.1
NP_109481   495 sgp---iapANPWGasTLEWATssppPSYNF 522  Mesorhizobium loti MAFF303099
ZP_00519622 503 sgk---ragSDPWDasTLEWETesppPPYNF 530  Solibacter usitatus Ellin6076
ZP_00033916 515 hga---raaANPWGagTLEWSVpsapPPHNF 542  Burkholderia fungorum

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