4JC0


Conserved Protein Domain Family
TIGR01125

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TIGR01125: TIGR01125 
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ribosomal protein S12 methylthiotransferase RimO
Members of this protein are the methylthiotransferase RimO, which modifies a conserved Asp residue in ribosomal protein S12. This clade of radical SAM family proteins is closely related to the tRNA modification bifunctional enzyme MiaB (see TIGR01574), and it catalyzes the same two types of reactions: a radical-mechanism sulfur insertion, and a methylation of the inserted sulfur. This clade spans alpha and gamma proteobacteria, cyano bacteria, Deinococcus, Porphyromonas, Aquifex, Helicobacter, Campylobacter, Thermotoga, Chlamydia, Streptococcus coelicolor and Clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 273453
Aligned: 7 rows
Threshold Bit Score: 664.138
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4JC0_A         2 RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIFSFVDAkdqyGYKLVVKGCLV 81  Thermotoga mari...
P75802         9 KIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQESLEAIGEALNE----NGKVIVTGCLG 84  Escherichia coli
Q55803         6 TIAINHLGCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRTLVELAEA----KKKIVISGCLA 81  Synechocystis s...
Q9Z8T3        17 KIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLDHLIDVkk-eNAKIIVTGCMT 95  Chlamydia pneum...
WP_010889448  22 RVGFISLGCPKALVDSERILTQLRAEGYEVAPSYEGADAVIVNTCGFITPAVEESLSAIGEALDA----TGKVIVTGCLG 97  Deinococcus rad...
WP_004082413   2 RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIFSFVDAkdqyGYKLVVKGCLV 81  Thermotoga mari...
O67016         2 KIGVVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETILEFAES----GKEVIVMGCLV 77  Aquifex aeolicu...
4JC0_A        82 QRyYEELKKEIPEVDQWIGVADPEEIANAIEngt------dlVPDQPEtvyr---------------------yrkrIDL 134 Thermotoga mari...
P75802        85 AK-EDQIREVHPKVLEITGPHSYEQVLEHVHhyvp---kpkhNPFLSLvpe------------------------qgVKL 136 Escherichia coli
Q55803        82 QHfQEQLLEEIPEAVAVVGTGDYQNIVDIIRrteqgqrvkaiSPNPSFiade---------------------nlprYRT 140 Synechocystis s...
Q9Z8T3        96 SNhKDELKPWMSHIHYLLGSGDVENILSAIEsres----gekISAKSYiemg---------------------evprQLS 150 Chlamydia pneum...
WP_010889448  98 ER-PEKIMERHPKVAAITGSEAVDDVMGHVRellp----idqGAFTGLlpvaapgmragvetpqrentrhgdvfapsVKL 172 Deinococcus rad...
WP_004082413  82 QRyYEELKKEIPEVDQWIGVADPEEIANAIEngt------dlVPDQPEtvyr---------------------yrkrIDL 134 Thermotoga mari...
O67016        78 ERyKEELEKEIPEVKAYFGTESWNEILNYLG-----------LKEKKEik--------------------------rILS 120 Aquifex aeolicu...
4JC0_A       135 EERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDL-Y-------RK-- 204 Thermotoga mari...
P75802       137 TPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDV-KhrtgfhnGEpv 215 Escherichia coli
Q55803       141 TNEAIAYLRVAEGCDYRCAFCIIPQLRGKQRSRPIESIVAEAEQLASQGVKELILISQITTNYGLDL-Y-------GE-- 210 Synechocystis s...
Q9Z8T3       151 TPKHYAYLKVAEGCRKRCAFCIIPSIKGKLRSKPLDQILKEFRILVNKSVKEIILIAQDLGDYGKDL-St-----dRS-- 222 Chlamydia pneum...
WP_010889448 173 TPRHYAYVKVAEGCNHTCAFCIIPKLRGLQVSRDAGAVLYEAYRLIAGGTKELMIIAQDTSAYGVDLrY-------RE-- 243 Deinococcus rad...
WP_004082413 135 EERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDL-Y-------RK-- 204 Thermotoga mari...
O67016       121 TPRSYAYLKIAEGCNRLCSFCAIPKIRGRHRSRKIEEIVDEAKFLADQGVKEICVVSQDTTYYGKDL-Y-------KE-- 190 Aquifex aeolicu...
4JC0_A       205 -Q---------ALPDLLRRLNSLNgEfWIRVMYLHPDHLTEEIISAMLELdKVVKYFDVPVQHGSDKILKLMGRTKsSEE 274 Thermotoga mari...
P75802       216 kT---------SMVSLCEQLSKLG-I-WTRLHYVYPYPHVDDVIPLMAEG-KILPYLDIPLQHASPRILKLMKRPGsVDR 283 Escherichia coli
Q55803       211 -P---------KLAELLQALGKVD-IpWIRIHYAYPTGLTPKVIEAIRDTpNVLPYLDLPLQHSHPDILRAMNRPWqGQV 279 Synechocystis s...
Q9Z8T3       223 -S---------QLESLLHELLKEPgDyWLRMLYLYPDEVSDGIIDLMQSNpKLLPYVDIPLQHINDRILKQMRRTTsREQ 292 Chlamydia pneum...
WP_010889448 244 -SefqgeqvraHLTDLAVKLGEMGa--WVRMHYVYPYPHVDRVVELMAQG-KVLPYLDIPLQHASPKILKLMRRPGaGK- 318 Deinococcus rad...
WP_004082413 205 -Q---------ALPDLLRRLNSLNgEfWIRVMYLHPDHLTEEIISAMLELdKVVKYFDVPVQHGSDKILKLMGRTKsSEE 274 Thermotoga mari...
O67016       191 -Y---------KLVELLEGLEKVEgIkWIRLLYLYPTEVHEDLIDYVANSeKVLPYFDVPLQHVSDRVLKDMRRGYdGKF 260 Aquifex aeolicu...
4JC0_A       275 LKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEEL 354 Thermotoga mari...
P75802       284 QLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPEEVKEERWNRF 363 Escherichia coli
Q55803       280 NDDIITRLKTALPDAVLRTTFIVGFPGETEEHFGHLLDFVQRHQFDHVGVFTFSPEEGTAAFDLPNAVPEEVMGDRRDRL 359 Synechocystis s...
Q9Z8T3       293 ILGFLEKLRAKVPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEKVKESRLKIL 372 Chlamydia pneum...
WP_010889448 319 QLDTIRRWREICPELVIRSTFIVGFPGETEEDFQELLQFLEDARLDRVGAFPYSDIEEADANALPGAVPEEVKQERLARF 398 Deinococcus rad...
WP_004082413 275 LKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEEL 354 Thermotoga mari...
O67016       261 VRNLIENIRKKIENAVFRTTFIVGFPTESEEDFKELKKFVEEGHFHWLGVFTYSPEEGTHAYPLGDPIPREVKEERREEL 340 Aquifex aeolicu...
4JC0_A       355 LLLQAEISNSRLDRFVGKKLKFLVEGKEGKf-------LVGRTWTEAPEVDGVVFVRGk-----gKIGDFLEVVIKEHDE 422 Thermotoga mari...
P75802       364 MQLQQQISAERLQEKVGREILVIIDEVDEEg-------AIGRSMADAPEIDGAVYLNGet---nvKPGDILRVKVEHADE 433 Escherichia coli
Q55803       360 MALQQPISAQKNAACLGQTLDVLIEQENPStg-----eFIGRSTRFAPEVDGLVYVKGn-----aNLNEIVPVVITATDD 429 Synechocystis s...
Q9Z8T3       373 SQIQKRNVDKHNQKLIGEKIEAVIDNYHPEtn----llLTARFYGQAPEVDPCIIVNEakl--vsHFGERCFIEITGTAG 446 Chlamydia pneum...
WP_010889448 399 MEVAQRISTEKLSEKVGRVMDVIIDEFNDDeddqpgtrLIGRTKGDAPGIDGQVYLYAgdfaglvKIGDIVRARIEDSDE 478 Deinococcus rad...
WP_004082413 355 LLLQAEISNSRLDRFVGKKLKFLVEGKEGKf-------LVGRTWTEAPEVDGVVFVRGk-----gKIGDFLEVVIKEHDE 422 Thermotoga mari...
O67016       341 MAIQRGITRKKNEEFLGKEIEVLIDGYEEEfs----fvPKGRAYFQAPEVDGVVYVESsr---dlKSGDILKVKVTQVAD 413 Aquifex aeolicu...
4JC0_A       423 YDMWG 427 Thermotoga maritima
P75802       434 YDLWG 438 Escherichia coli
Q55803       430 YDLYG 434 Synechocystis sp. PCC 6803 substr. Kazusa
Q9Z8T3       447 YDLVG 451 Chlamydia pneumoniae
WP_010889448 479 YDLFG 483 Deinococcus radiodurans
WP_004082413 423 YDMWG 427 Thermotoga maritima
O67016       414 YDLAG 418 Aquifex aeolicus VF5
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