Conserved Protein Domain Family
PBP2_BsGlnH

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cd13689: PBP2_BsGlnH 
Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold
This group includes periplasmic glutamine-binding domain GlnP from Bacillus subtilis and its related proteins. The GlnP domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270407
Aligned: 26 rows
Threshold Bit Score: 285.28
Created: 5-Jun-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on sequence similarity to the glutamate/cysteine/aspartate binding proteins.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #  #                                               #              
NP_390621          39 LAAIKDNDKIVFGVKtDTRLFGLKNpssGEIEGFDIDIAKQIAKdi---lGDEKKAQFKEVtSKTRIPMLQN--GDIDAI 113 Bacillus s...
AAG07582           26 LADIRKKGEIVIGTLgTDEPNSFIDpktRQIIGYEVDLGTEIAK------AIGVKPVFKQIsVAARIPELQQ--GHVDLL 97  Pseudomona...
ADJ63186           33 LAEIQARGTLVCATLaNNEPLGFPDpqsRQVVGFDVDMCAAVAR------RLGVQMEQKSVtVEGRLPALIE--GQADLV 104 Herbaspiri...
YP_001632757       29 WDTIKARGTIVCGTQnASSPYGFQDpvkREYVGYDVDMCKAIAK------ELGLKLQHKPVsTEARIPEVKM--GRVDMM 100 Bordetella...
ADW15197           27 LADVKKKGVLVAGVKdSLPPFGYVDeksREIVGYDIDFVKYIAK------KLGVKVELKPVtSASRMPQLME--GNIDII 98  Geobacter ...
ADV67554           21 RDQICQDGKFTAGVKyDSPPFGFVNe-dGDVGGFDVDLVKEIAKdlsaacKKTVKLELKQVtSKNRIEFVQN--GTVDLA 97  Deinococcu...
YP_002505966       30 LDKVLERGVVNIGSGnNVPPMNYIDe-nGNWTGFDIELSDAIAE------RLGVKLERVVVnNKTRISFLAN--GTVDMV 100 Clostridiu...
EGB13376           26 YDRVMSTKTLKVGLSnQGIPFGFIDd-kNEWVGFDVDMATEIAK------RLGCKLEKVVVnNNTRISFVQTnpPKVDMV 98  Desulfovib...
YP_001678800       49 IQTIKNRGYLIAGVKnDVPLFGQLKsgaDKPEGFEVDIMKELAKkl---fGDESKVKLEKVeSQTRIPMLQN--GQIDIV 123 Heliobacte...
REF_jgi:Sfum_3163  31 MDKIERTGKVNMGHReGAVPFGYMDe-kGQWVGFDMDLGAELAKaletkfGKKIEYIKTPMnPKNRIPLVAN--GTVDVG 107 Syntrophob...
Feature 1               #      #                                           ##                         
NP_390621         114 VATmtITEERKKeVDFSD-VYFEAGQSLLVKkgskiksvenLGKGSKVLAVkGSTSSQNIREKap-------eaSVLEFe 185 Bacillus s...
AAG07582           98 AASltHNKEREAlVDFSY-SIIVTGQKALVKknagf-aslhDLDGKKVLTVkGGTQEPNIRKAlp-------naQVVTFe 168 Pseudomona...
ADJ63186          105 SAAlgYTRERARqIDFTA-SHYQNPIKLIVQsdsgl-nlisDLADKRISANrSSTPEQAVRRVlp-------kaMLQTFa 175 Herbaspiri...
YP_001632757      101 AGAvaWLPKRAEqVDFSD-QYLQGYIKVLVKadsgi-ktlaDLKGKKVCASsGSSSAAIAEKVlq-------gaNVLTFq 171 Bordetella...
ADW15197           99 AATmtKNPERAKqIDFSH-TYFLTGQKFITKkgav--kslkDLEGKKIGTAkGSTSEQNVAKAip-------taTVLSFd 168 Geobacter ...
ADV67554           98 AATatATYGRMDvVDFSN-TYFIDGQRLLVPansai-ksvkDLAGKRVGTAqGSTSEANLKAAap-------kaSVVSFq 168 Deinococcu...
YP_002505966      101 VSNlsHTRSRDEqIDYVEpPYLWTGKIAYAKkgkf--knltDLAGKKIAVDqGSNAYIAIQQEiekvn--gakpDIQTFq 176 Clostridiu...
EGB13376           99 LSNmtHKRVRDEkIDFSI-TYFFDGQKFLAKkgtv--kdvkDLANMKVGSMqGTTSIVNATAYlkelg--npnpSVTGYd 173 Desulfovib...
YP_001678800      124 AGTttITEERKKqIDFSD-VYFKAGQSLLVKkgspi-ksvtDLKGKTVSTVrGSTSAKNIREKap-------daKVDEYa 194 Heliobacte...
REF_jgi:Sfum_3163 108 IGSttITLEREEaVDFSL-PYFLTGTKLLVPkgspi-rdyrQLAGKKVGVGsGSTANIKGLQKaidaktidppcEMVLFe 185 Syntrophob...
Feature 1                               ##                             #                              
NP_390621         186 NYAEAFTALKSGQGDALTTDnaILYGMADen----kNYQLTgkpftDEPYGIAVKKGQsALAKEINASLKKMksdGRYDE 261 Bacillus s...
AAG07582          169 TSQQALLALQQGKGQAFVDDesALVNDFGklgaaagGYAILpenlsTEALAIAFRKGNpQLKQLVDSTLAGLersGAAEQ 248 Pseudomona...
ADJ63186          176 DTPQAFLALAQGRADGLAISmpSGIRFVNes---agRFKFVegalsWEPTALGVKKGErRLRDAVNAALAALekdGEIDA 252 Herbaspiri...
YP_001632757      172 NIAQCYVGLQSGKVEAMTAGelVLRRFLNdsvkegkPTALLdeptyTEHIGIIVKQGEaALLAQINQAIAALdksGELTR 251 Bordetella...
ADW15197          169 DYPQAFLALQQGKVAAVTTDesILAGILGkap-nknKFEIPnlqisEEPYGLGMRKDDkNFVAFVNKTLLEMeknGEAKK 247 Geobacter ...
ADV67554          169 QYTDAFTALQQGRVDAVSTDstILLGLKAsap-dpsKFKIVgayfsNEPYGIILKQNDsKWRNFVNESLTRMaadGTYAK 247 Deinococcu...
YP_002505966      177 SNAECFLALKQGKVDAFTQDsvIIAGVAGke---gvEYEPIggiysPGLYGIGVPPNDsKWKDKISFILQDLmrdGTYDK 253 Clostridiu...
EGB13376          174 GEVAMFEALRSGRVQAITTDstILLGYAAkv---pgQFELVgdfisDEPYGIGLPQDDsAWRDTINFTLQDIwkdGTYKQ 250 Desulfovib...
YP_001678800      195 TYTEAFQALKLGRSDAMTTDnsILMGFANed----pNFELVgglftEEPYGFGFQKGHpEWVNYVNDFLKELkanGKYDE 270 Heliobacte...
REF_jgi:Sfum_3163 186 DHAKGFLGLQQGKIDAYFTDeaMLAGMRAkaq-kpdDWEVVapfltYEPYGFILPRDDsKWRDFVNATLIRMykdGTFEK 264 Syntrophob...
Feature 1                    
NP_390621         262 IYKKWIK 268 Bacillus subtilis subsp. subtilis str. 168
AAG07582          249 LYLKWYG 255 Pseudomonas aeruginosa PAO1
ADJ63186          253 LWTKWFG 259 Herbaspirillum seropedicae SmR1
YP_001632757      252 IYDKWMG 258 Bordetella petrii DSM 12804
ADW15197          248 IFEKWFG 254 Geobacter sp. M18
ADV67554          248 IFRKWFG 254 Deinococcus maricopensis DSM 21211
YP_002505966      254 IYDKWFG 260 Clostridium cellulolyticum H10
EGB13376          251 IYDKWFG 257 Desulfovibrio sp. ND132
YP_001678800      271 LYKKWFK 277 Heliobacterium modesticaldum Ice1
REF_jgi:Sfum_3163 265 IYNKWFG 271 Syntrophobacter fumaroxidans MPOB

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