3EUE,3P0E,3KU4,4TXJ


Conserved Protein Domain Family
UP_hUPP-like

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cd17763: UP_hUPP-like 
Click on image for an interactive view with Cn3D
uridine phosphorylases similar to a human UPP1 and UPP2
Uridine phosphorylase (UP) catalyzes the reversible phosphorolysis of uracil ribosides and analogous compounds to their respective nucleobases and ribose 1-phosphate. Human UPP1 has a role in the activation of pyrimidine nucleoside analogues used in chemotherapy, such as 5-fluorouracil. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.
Statistics
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PSSM-Id: 350163
Aligned: 46 rows
Threshold Bit Score: 364.162
Created: 29-Jun-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:the neighboring subunit contributes residue(s) to the protein-ligand interaction
  • Structure:3P0E: human UP2 (hUPP2) bound with 5-benzylacyclouridine and phosphate ion; contacts at 4A
  • Structure:4TXJ: Schistosoma mansoni UP homodimer bound with thymidine and sulfate ion in each of 2 active sites; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    ###  #                                   #       
3EUE_A     49 EDILYHFNLTTSRh---NFPALFGDVKFVCVGGSPSRMKAFIRCVga-----eLGLDCPgr-dyPNICAGtdRYAMYKVG 119 human
3P0E_A     20 EDILYHLDLGTKTh---NLPAMFGDVKFVCVGGSPNRMKAFALFMhk-----eLGFEEAee-diKDICAGtdRYCMYKTG 90  human
EER09954   22 CDHYYHLGLDTDM----DLQALFGDVKYFVMMGSPARAETFAEVMana--fveQGLPKPt---vMRLGKTe-RYSMFKCG 91  Perkinsus marinus ...
CBY22954   40 VDFLYHIGLDTSGg---DLEKRFGDVRLVVVGGCHKRMSDFAKVLvermrscdIDVNEDc---lVDMSEErgRYCLFKVN 113 Oikopleura dioica
ESO96562   14 GDFLYHLGIDTSQv---NCKEIFHDVKFVCLGGSTNRMLKFAKFIn-------ENLNGNse-epYNYAYKtdRYCLYKTG 82  owl limpet
CBY18173   34 VDILYHLAVDTSDl--eGLKNKYRDVKFVCMGGSRGRVENFARQAyea---msGYYSMPpdahtNDIARRagRFVMYKVG 108 Oikopleura dioica
KNC48838   59 VDHLYHLGLDSSM----PLQEQFGKTRFVVMGGSPVRALDVAQLVyq-----fMGVAAPqp--iEPFGKTe-RYSMYNCQ 126 Thecamonas trahens...
ETI47083   29 SDVLFHIGLTCSQeerqQVVNTFGDVKFFITGGSAERMTHFAHLVak-----eLGISTPygyklAPIGSTs-RYTLYKVG 102 Phytophthora paras...
KJE95516   52 VDFLYHLGLDTSM----DFKAMFGDVKFVCMGGSNNRMLEFAKRVae-----eLGITLPvgaaiADVSRTd-RYCLYKVG 121 Capsaspora owczarz...
KNC82679   76 NDFLYHIGYASTD----DLVSLFSDVKYVFTGGSSGRMQKFANSLke-----aAGVKLPtgaqlADLSTTd-RYSLFKVG 145 Sphaeroforma arcti...
Feature 1                 #                            ######                                 
3EUE_A    120 ----PVLSVSHGMGIPSISIMLHELIKLLYYARCSN-VTIIRIGTSGGIGLEPGTVVITEQAVDTC--FKAEFEQIVLGK 192 human
3P0E_A     91 ----PVLAISHGMGIPSISIMLHELIKLLHHARCCD-VTIIRIGTSGGIGIAPGTVVITDIAVDSF--FKPRFEQVILDN 163 human
EER09954   92 ----SVISVSHGMGGPSLHILMNEVAKLCNHVGIIDtVRWIRLGTSGGCGVAPGTVVCTTQAINDE--IKPCWRTVQLGK 165 Perkinsus marinus ...
CBY22954  114 ----HVLIANHGMGAGSVSILIHELLKLLAYAKAGN-VSFVRMGTCGGLDVEPGTICLTDSAMGPD--GESGYEFFQCGK 186 Oikopleura dioica
ESO96562   83 ----PILIANHGIGVPSLSVLLNEIFKLLFYAQCSD-VIFIRLGTCGGIGVEAGTVVITDNVVNGElePIFSYVSIKLGK 157 owl limpet
CBY18173  109 ----PVLTLNHGMGFGSLNIALHEVAKLLRYSGATD-FSFIRMGTSGGLGAEPGTVIITKEAYDAT--CEPGYEVVSCGK 181 Oikopleura dioica
KNC48838  127 lgevNVLSISHGMGQPSLSICLHEMAKLMHYAKARN-VAFIRVGTSGGVGVAPGTCVVAKSAVSGL--LEPFYSLDILGK 203 Thecamonas trahens...
ETI47083  103 ----PVLVANHGIGMPSISILLHEVTKLLEYAGAHG-VTYIRMGTSGGIGVEPGTVVITSEGVNNK--LESVDEVAVLGN 175 Phytophthora paras...
KJE95516  122 ----PVISVSHGMGIPSISILLHEITKLMHYAGATE-VIYLRIGSSGGIGVPAGTIVITEEALDGE--LNPFHTLKVLGN 194 Capsaspora owczarz...
KNC82679  146 ----PVLSVSHGMGMPSISILLHEITKLLAYAGATG-VSMVRMGTSGGVGVEPGSVVVTTTAVNGS--LEPFQRCTILGE 218 Sphaeroforma arcti...
Feature 1                                            #   # #                             #### 
3EUE_A    193 r-VIRKTDLNKKLVQELLLCSAELsefTTVVGNTMCTLDFYEGQGRLDGALCS-YTEKDKQAYLEAAYAA-GVRNIEMES 269 human
3P0E_A    164 i-VTRSTELDKELSEELFNCSKEIpnfPTLVGHTMCTYDFYEGQGRLDGALCS-FSREKKLDYLKRAFKA-GVRNIEMES 240 human
EER09954  166 vfEVPTDVLDMQFVDDIIASAPEDi--PVVKGKTMAADDFFEGQGRTDGALTPwYTEEDKINFLHRLHDA-GVRNIEMES 242 Perkinsus marinus ...
CBY22954  187 r-ARYPAEADAKLNSLIASTCAKFn-rTYKIGNTVTSPDFYESQGRLDGAFCD-YSEAAKLGWLADLAENkGAINCEMEA 263 Oikopleura dioica
ESO96562  158 r-INITTTVDADLVREIYDHSSQNnsfTIVRGTTCSVDCFYEAQGRLDGALCD-YTEEDRKQFFEKLQRN-GVKNLEMES 234 owl limpet
CBY18173  182 k-VRYDATADKKLNEEFIQAAEDLs-iNYQIGNTMGCDDFYEAQCRLDGALCD-YTLKDKFDFIRRANKEaGVFNMEMEA 258 Oikopleura dioica
KNC48838  204 t-HQFPANFDSQLADDILACAGDDi--AAVAGITCGTDCFYEGQGRLDGMVAD-YSRDDKLAFLQKAHEA-GVTNFEMES 278 Thecamonas trahens...
ETI47083  176 t-VLRPSICSPEVREEIIAAAKEVg-lPYAVGKTLSCNDFYEGQGRLDGAICE-YTLEDKMAFLQKLADA-GVRNIEMEA 251 Phytophthora paras...
KJE95516  195 k-IYRDAKFDRALLDEIAACKTPEm--NVLVGKTMCAEDFYEGQARLDGAICE-YPQDAKFAFFSKAQAK-GVVNMEMES 269 Capsaspora owczarz...
KNC82679  219 e-VKRTSEFNDDLGDLIASCWDEDt--PIVRGKTMSTDDFYEGQGRLDGAICD-YVGKNKMDFLMKAHKG-GVRNIEMES 293 Sphaeroforma arcti...
Feature 1                          #       #                        
3EUE_A    270 SVFAAMCSACGLQAAVVCVTLLNRLegDQISSPRNvLSEYQQRPQRLVSYFIKK 323 human
3P0E_A    241 TVFAAMCGLCGLKAAVVCVTLLDRLdcDQINLPHDvLVEYQQRPQLLISNFIRR 294 human
EER09954  243 VALMGFCQRAKIPAACVCVTLVNRLegDQITSTKRqLAKYNEYSIRVVSNFIAT 296 Perkinsus marinus ATCC 50983
CBY22954  264 AIFLSLCQRAGVSATVACVALLNRLhgDQVTSEGAaEGALAVKALREILLDICL 317 Oikopleura dioica
ESO96562  235 LGLFSYCHRAGYKAAMIAVALLNRLeaDEPTSNIDmLKEWESRPFYTVLNFIRS 288 owl limpet
CBY18173  259 NVFLSFCNRAKIPGAVVCCSIVNRLkgDQITSTKEeLKSFEQHPLQLILQVIKN 312 Oikopleura dioica
KNC48838  279 TCLAAQTSRWGISAALVCTTLLNRLdgDQVTSTPEqLKQFSLNAQTLVLRYIKK 332 Thecamonas trahens ATCC 50062
ETI47083  252 RLMASFCHKLNIPVAVVCVTLLNRLngDQVLSSHEtLQDFERRPAAVLLHYIKT 305 Phytophthora parasitica P1569
KJE95516  270 LEFAAFTWHLKIPAAVLCATYLNRMetDQVSSPPHvIHAYSENTQNLALAFMKK 323 Capsaspora owczarzaki ATCC 30864
KNC82679  294 LQFASFTHRLGIPAAMVAVALLNRLegDQVPASAEtLSEYSARPQRLLASFLKK 347 Sphaeroforma arctica JP610

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