3T5V,3T5X


Conserved Protein Domain Family
DSS1_Sem1

?
cd13768: DSS1_Sem1 
Click on image for an interactive view with Cn3D
proteasome complex subunit DSS1/Sem1
The evolutionarily conserved deleted in split hand/split foot protein 1 (DSS1)/Sem1 is a subunit of the regulatory particle (RP) of the proteasome. It is implicated in ubiquitin-mediated proteolysis, is required for the maintenance of genomic stability, and functions in DNA damage response. DSS1/Sem1 also displays RP-independent functions; it serves as a functional component of the nuclear pore associated TREX-2 transcription-export complex and is required for proper nuclear export of mRNA. In mammalian cells, DSS1 binds and stabilizes the tumor suppressor BRCA2, and contributes to its function in mediating homologous recombinational repair. In yeast, Sem1 also complexes with the COP9 signalosome, which is involved in de-neddylation. DSS1/Sem1 may be a versatile protein which contributes to the functional integrity of multiple protein complexes involved in various biological processes.
Statistics
?
PSSM-Id: 259841
Aligned: 17 rows
Threshold Bit Score: 43.5274
Created: 5-Apr-2013
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
nuclear mRNA
Conserved site includes 36 residues -Click on image for an interactive view with Cn3D
Feature 1:nuclear mRNA export protein (Thp1) interaction site [polypeptide binding site]
Evidence:
  • Structure:3T5V: Saccharomyces cerevisiae Sem1 interacts with the nuclear mRNA export protein Thp1; contacts at 4A.
  • Structure:3T5X: Human DSS1 interacts with the Thp1 homolog PCID2; contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          ################                            ###### ## #    # ## ### #####
3T5V_C        24 INKKSLEEDDEFEDFPIDTWANgetik-------------snavtQTNIWEENWDDVe-vDDDFTNELKAELDRY 84  baker's yeast
CCA40856      12 TNFKALEEDDEFEDFPVQDWPNdkti---------------taekQEHLWDESWNDDd-nEDDFTKRLRQELANA 70  Pichia pastoris CBS ...
GAA89532      21 QKPPVLEEDDEFEDFPVEDWPQeeteqg-----------saangaSAHLWEESWDDDd-aAEDFSKQLKEELKKV 83  Aspergillus kawachii...
EGG04482      31 STLDTLGEDDEFEDFPIENWTEdksdishlimnsksnktlnqsttMEDLWEDNWDDEv-lESDFAHQLRAELEKT 104 Melampsora larici-po...
XP_002501439  11 EVAVDLECDDEFEEFGNEEWGAeee-----------------daeDVNQWEEDWDDSe-kSDDFTRQLRAELEKF 67  Micromonas sp. RCC299
XP_003373902 455 DDPYSWFEDDEFEEFSDGDCSDgelpe-------------nseenTEDLWEDNWDDDn-vEEDFSTVEREKVPIK 515 Trichinella spiralis
EJD35436      29 THIAALEEDDEFEEFPVQDWDPsetemkrlgk---aeagadgqkvADSLWEDNWDDDd-iEEDFSAQLRSELATV 99  Auricularia delicata...
NP_594968      7 PSLENLEDDDEFEDFATENWPMkdte---------------ldtgDDTLWENNWDDEdigDDDFSVQLQAELKKK 66  Schizosaccharomyces ...
NP_497346     20 VVEKKEFEEEEFEEFPVQEWAEraeg----------------eedDVNVWEDNWDDEt-hESEFSKQLKEELRKS 77  nematode
Q7SA04        24 KKTAVLEEDDEFEDFPVDDWEAedteaa------------kgnneAKHLWEESWDDDd-tSDDFSAQLKEELKKV 85  Neurospora crassa OR74A

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap