Conserved Protein Domain Family
Met_dep_hydrolase_A

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cd01299: Met_dep_hydrolase_A 
Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Statistics
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PSSM-Id: 238624
Aligned: 32 rows
Threshold Bit Score: 236.421
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active site
Feature 1:active site [active site]
Evidence:
  • Comment:active site is based on homology to other members of the amidohydrolase family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           # #                                                         
BAA85881     43 AEIIEa--hGKTLLPGLIDSHTHAKp------------------------------------pALEMALTFGVTTELDMF 84  Arthrobacter sp.
AAL32279     29 AVTSEe--iRGYAYPGLLDAHTHPGmrrtpepl-----------------------alseirrRLAVLARHGITTVRDAG 83  Arcanobacterium ...
ZP_00089471 155 ARELDl--sGRSVLPGLISNHSHLGmtdgtgagpq-------------------nynrgnierQLRQFQRYGVTTVTSLG 213 Azotobacter vine...
NP_628371    41 CEVVDg--sGATLLPGLIDAHVHSAp------------------------------------gSLALALRFGVTTELEMQ 82  Streptomyces coe...
EAA63213     95 VRVFYg--nGRTLIPGLGDAHTHLSwnggdlgrlgel---------------gveehtlltarSARCFLDSGYTMCFGAA 157 Aspergillus nidu...
NP_781588    45 YEKIDi--tGKIIMPGLIDTHLHFSgnrtdndtewvl--------------dpviqktivavaQAREALEHGLTSVGEIS 108 Clostridium teta...
NP_214588    56 MNLVDl--gESTLLPGLVDAHAHLCwdpdgrpedlag--------------dphavlvgrarrHAAAALRSGITTIRDLG 119 Mycobacterium tu...
NP_696612    57 YHYLDg--tGKIVMPGLINAHTHLFsqgkplnpklatpkgqrmvatfahsplgkpymaatvkhNATTLLESGVTTIRTLG 134 Bifidobacterium ...
NP_745338    44 PQPGDreahGQFVMPGLVDVHTHLAfgnaqseedidiw-------------tsdefralrglfFAQHVLAAGVTSMVCPG 110 Pseudomonas puti...
NP_889254    50 HTVVDl--pGRTIMPGLIDAHTHISfgesrseeenaly-------------tpvefrtakalwYARKVLQAGVTSAFDAA 114 Bordetella bronc...
Feature 1                                                                                       
BAA85881     85 Sdpawmt--eqrreAQTRNSMADVRSAMTgaSVAGGHPtglvgv---------vfdkqcPVLENAEDAEAFVAARVAEGA 153 Arthrobacter sp.
AAL32279     84 Gqhd--------pkGAWEPGLARVMHSGQhiARFKRYEry------------------lAVDVEPADLPAEAVRQFEKGD 137 Arcanobacterium ...
ZP_00089471 214 Lngplfq-rlrdeaRAGIGVGADLFGADRgiGVPEGAPpmnva------------pdqlYRPATVEEARAAVREMAARKP 280 Azotobacter vine...
NP_628371    83 Gmntre----nrgsIADDDTLADVRSSGFaiTPPGGHPselmpegfrpkwdlppvmplmPFSTTPEEAAAYVPQLLARGS 158 Streptomyces coe...
EAA63213    158 SakrrldvvvrdaiNAGDIPGPRYLANGQemARRDGDLvpg----------------itAYADGPEEMREVIREHVKLGV 221 Aspergillus nidu...
NP_781588   109 Rsgiyi----rnmiEEGVIPGPRVVTTGLgfCRTAGHGdshklpldy----nndshpwaERVDGPWDLRKAIRRRIRENP 180 Clostridium teta...
NP_214588   120 Drdyaal-alreeyRQKTTVGPELVVSGPplTRSGGHCwf-----------------lgGVADSVEELVDAVQERAARGA 181 Mycobacterium tu...
NP_696612   135 Dvgyevv-tlrdqiDAGQILGPRILASGPlmAIPEGHGapl----------------iaLTSGTPEEARTAVAQNLKAGV 197 Bifidobacterium ...
NP_745338   111 Dsgqlsi-avrntvNAGLFEGPRIAASSRviTNRQSLNdwfptrvg------apeyftaALVTSRDDAIAQIRKQAKDGV 183 Pseudomonas puti...
NP_889254   115 Tsyniaq-avrdaiDTGMFEGPRFTVSGKqlTNHQGLEdsfpnema------fppgqsaVLVKTREDLVEAIRYQVKDEV 187 Bordetella bronc...
Feature 1                                                     #                   #             
BAA85881    154 DYFKLVIEDGTIlghevpr-----lsdemvYALVAAAHaqglMAVAHAMTvelallAIRAGVDGLMHVagdrlmtde--- 225 Arthrobacter sp.
AAL32279    138 GWIKIVGDWIDRsvgdttp----lwprqalIDAVAGVHdvggKVTVHTFAtetvddLLEAGVDGIEHGtgmtrdh----- 208 Arcanobacterium ...
ZP_00089471 281 DLIKIWVDDFNHtlaykm-------kpeiyTAVIDEAHahglRVAAHVYYlddakkLIAAGADILAHGvrdlpldde--- 350 Azotobacter vine...
NP_628371   159 DFIKFMIDDGTVeghpglp----sldratlNAGVAEARkygaLTVAHALTveatrmAAEAGVDGVTHVfmdqphtae--- 231 Streptomyces coe...
EAA63213    222 DQVKLSMSGESIteirdamd--cyfsdeetKACVDEAHkhgiRLCAHARArdsvrqCIKHGVEIIYHGsyideevtaa-g 298 Aspergillus nidu...
NP_781588   181 DAIKIWSTGGGIwrldakad--lhycmeeiQAVVDECNmvglPVWSHAEGyegalnSCKAGVSAIIHGqelneec----- 253 Clostridium teta...
NP_214588   182 DWIKVMATGGFVttasdpwq--pqygsgqlAAVVAAAEqvglPVTAHAHAtagiaaAVAAGVDGIEHCtflsegsaaasp 259 Mycobacterium tu...
NP_696612   198 NAIKIAATGGVTdaqeigeagspqmsveqmRAICDEAHqygvIVGAHAQSpegvrrSLLAGVDTIEHGsvlddeligm-f 276 Bifidobacterium ...
NP_745338   184 DLIKIAMDGTHRrpngeiia---aftadetREMVYEAHrlgcRVATHAYGreavmcAAKAGVDLVFHAfymddac----- 255 Pseudomonas puti...
NP_889254   188 DAIKVSGSNDNLitpdalgs--saftyeefKIIADETHrlgrLCSVHARSrdaalyAAQAGFDNLFHAsyiddeg----- 260 Bordetella bronc...
Feature 1                                                                                       
BAA85881    226 -evaevaqsGIFVVPTLstmasvy-gdkhgqHLAEDDrtrpllsdawaenlcq-----------cwhltnpgstanvidA 292 Arthrobacter sp.
AAL32279    209 --lleaaarGILVTPTVhqirrfp-efaakgARFATYverm----------------------------------lgmdA 251 Arcanobacterium ...
ZP_00089471 351 -lieaikarDAWYISTLdldeafy-ifatqpEWTRTPffrqalqpalaaqlddpawrrqtladpkklaiweqgvktnqaN 428 Azotobacter vine...
NP_628371   232 -iidlirdaGMFVIPCItlnasm--mgvtgsELADDPrvaarlddswdrtlrs-----------sydrypqgsledvcaT 297 Streptomyces coe...
EAA63213    299 mdalekkrsQHVVVPAInwlyatl-yeagafGYATEAaekvgykk---------------------------eleaairG 350 Aspergillus nidu...
NP_781588   254 --leimkekDITFCPTLqffye-----wftvYEPPYRaihdkypgknt---------------------aekelnriidN 305 Clostridium teta...
NP_214588   260 dvveaivaqGVWCGMTIp------------rVYPEMPenlvav------------------------------vqdgwrN 297 Mycobacterium tu...
NP_696612   277 rhnpnalrgYSALIPTLsaglpltllgqdvtGITDIQlensknv-----------------------------vggmvsG 327 Bifidobacterium ...
NP_745338   256 --iealleaGSVLAPTMtfpqnt--vdfcqpHDPAIStgyaayca--------------------------rtlelgapV 305 Pseudomonas puti...
NP_889254   261 --ieaclknGCVITPTLtllvnlveakqshaGASSAQafrqei-------------------------------eaasvN 307 Bordetella bronc...
Feature 1                           #                                                           
BAA85881    293 TRRLYe-----aGVDVLAGSDavtvg--vpgtaHGVSMHGELELLVDcgl-spaAALRAATLLPAKRfsl--ddrGRIAP 362 Arthrobacter sp.
AAL32279    252 VRREHlalmvevGTHFLMGSDtae-------nvAEVNLVDELIDAVDdgm-padVVMAAASYAGRARig-----fGVWSA 318 Arcanobacterium ...
ZP_00089471 429 LKRLVe-----aGAKVGFGTDsgat----plriPGFAEHRELQLAVDagl-tplQAIALATGNAAALlgl--ddrGVIAP 496 Azotobacter vine...
NP_628371   298 VRALDa-----aGVDVLAGTDvsmpetffgglaHGASLHHELQYLVAagl-tpsRALRAATATTARRfrl--sdrGRVAE 369 Streptomyces coe...
EAA63213    351 LREMHr-----rGIVVLPGGDygf------awtPHGTYARDLEHFTKllgftphEAIIAATYGVAKLfmrs-hemGQIKA 418 Aspergillus nidu...
NP_781588   306 LQNANk-----kGIRITVGSDsfcs----sltpYGEYAITEMYTLNKagl-tkmETILAATKNGAEMlrid-ditGTLEE 374 Clostridium teta...
NP_214588   298 IRRLId-----aGARVALSTDagva-----pgrRHDVLPDDLVYLSRhgf-tstEVLTGATAAAAAScglg-hrkGRIAP 365 Mycobacterium tu...
NP_696612   328 ARQAHe-----aGLMIGVGTDtgm------tfvPQYATWRELELLVAyagfspaEALHAATAVNASIlgvd-aetGSLEV 395 Bifidobacterium ...
NP_745338   306 LKRAKa-----aGVPFACGSDsgfa-----vtpYGEWHARELELLVRhldftpaEALFAATHVGARLmprg-etlGTLEP 374 Pseudomonas puti...
NP_889254   308 LRRAYd-----aGVPLLAGSEsgws-----pvpYGHWHAREMEIFVKllgltplQAIHANTLACTRLlarhghevGKLEA 377 Bordetella bronc...
Feature 1                           
BAA85881    363 GLQADLVLVDGDPTTDVRQT 382 Arthrobacter sp.
AAL32279    319 GEPADVVIYREDPERNIETL 338 Arcanobacterium pyogenes
ZP_00089471 497 GKRADLLVVAGDPSQTIADS 516 Azotobacter vinelandii
NP_628371   370 GLRADLLLVDGDPTGDIGDT 389 Streptomyces coelicolor A3(2)
EAA63213    419 GNFADCVLVDGDPLDDITVL 438 Aspergillus nidulans FGSC A4
NP_781588   375 GKFADLLVLSKNPLEDIHNV 394 Clostridium tetani E88
NP_214588   366 GYDADLLAVAAGVDHDPAGL 385 Mycobacterium tuberculosis H37Rv
NP_696612   396 GKSADLLVLNANPLDDLRAL 415 Bifidobacterium longum NCC2705
NP_745338   375 GKQADLLVLDGSPLDDIRIL 394 Pseudomonas putida KT2440
NP_889254   378 GRLADVLVLPGNPLEDITLL 397 Bordetella bronchiseptica RB50

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