4GCW,2FK6,2CBN,3ZWF,3ZWF,1Y44


Conserved Protein Domain Family
RNaseZ_ZiPD-like_MBL-fold

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cd07717: RNaseZ_ZiPD-like_MBL-fold 
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Ribonuclease Z, E. coli 3' tRNA-processing endonuclease ZiPD and related proteins; MBL-fold metallo-hydrolase domain
The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Escherichia coli zinc phosphodiesterase (ZiPD, also known as ecoZ, tRNase Z, or RNase BN) is a 3' tRNA-processing endonuclease, encoded by the elaC gene. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme; this subgroup includes the short form (ELAC1). Only the short form exists in bacteria. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.
Statistics
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PSSM-Id: 293803
Aligned: 193 rows
Threshold Bit Score: 218.087
Created: 24-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       #                        ## # ##              
4GCW_A      3 LLFLGTGAGIPAkaRNVTSVALKLleerrsVWLFDCGEATQHQMLHTtikprkIEKIFITHMHGDHVYGLPGLLGSRsfq 82  Bacillus subtilis ...
EMR74332    6 IVFLGTGGSWPTikRNVASVAVKRdg---eTLLFDCGEGTQRQIQKSsishmqITKIFITHFHGDHFLGLPGLIQTMqln 82  Thermoplasmatales ...
KON28213    3 IIFLGTGGSLPTkkRNLPCVVVKRgs---eIIMFDCGEGTQKQLIHAkiginkKMKILITHMHGDHVLGLPGLFQSMsll 79  miscellaneous Cren...
KON34150    8 VVFLGTAGSVPTpnRSLTSIILKRqn---eQIMFDCGEGTQRQILIAqtgfhkKMKILISHLHGDHVLGLPGLLQTMnlm 84  miscellaneous Cren...
A0RYQ9      3 LVFLGTSAAQPTtrRGLSCTCLKVeg---eILMFDAGEGMQVPYLRSklgwnkKMRIFITHLHGDHCLGLLGLLQTMsmq 79  Cenarchaeum symbio...
AIC14247    7 MVFLGTSAAAPTpeRGLSSIAIMRdg---eLLLFDAGEGMQRNFIKAglgmnrKMKVFITHMHADHCVGLLGLLQTMslq 83  Nitrososphaera vie...
A9A3X2      3 LVFLGTSAAQPTenRGLSCICLEReg---eVLMFDAGEAAQISYMKSglgwnkKMKIFVTHLHGDHCVGILGLLQTMsmq 79  Nitrosopumilus mar...
EQB64893    7 LYFLGTGGSWPTpqRNTLSIGIRVdd---eGLLFDCGEGTQTSLMKSslslmkIKRIFITHFHGDHFLGLPGLIQTMsfy 83  Thermoplasmatales ...
EGQ43408    3 IWTVGTSSAVPSrnRGLPANIISYkg---eRILFDCGEGTQRKLMAEklglmkISRIFISHWHADHFSGLLGLIQTMeme 79  Candidatus Nanosal...
Q9HJ19      7 IIFYGTGGSWPTplRAMPGVGVKIdd---vLNLFDCGEGTQKQIMKSstsfmdIDNIFITHFHGDHFLGLLGLVQSMsfn 83  Thermoplasma acido...
Feature 1                                                               ##                    
4GCW_A     83 ggedELTVYGPKGIKAFIetslavtkthltYPLAIQEIEe-GIVFEddqFIVTAVSVIHGVEAFGYRVQEkdvpgslkad 161 Bacillus subtilis ...
EMR74332   83 drkePLHIYGPTGMVNLTksllslgyfrpaYEIIPHDVKd-GAVLKfngYQVKTLRVRHNVPAVAYCLEEdmrpgkfnks 161 Thermoplasmatales ...
KON28213   80 grdkKIELYGPKGIIDFIesieravkygrtFELEISEVGk-GEVIDdreYKILSAKTDHGILCFAYSLEEkdkpgrfnpi 158 miscellaneous Cren...
KON34150   85 grkkKIEVFGPTGIKQFLdcskeilqfglnFLVKIIEIKnsGIVCEekdYFIKAIKSNHTDMSFAYGFIEkprpgkfype 164 miscellaneous Cren...
A0RYQ9     80 rrteSVEIYGPPGTDEFVaanarmlgfspsFPVIMETTEe-GTVVDapgYEVSACRAEHSVEAFSYRFSEkggpgrfste 158 Cenarchaeum symbio...
AIC14247   84 grerRLDVYGQPRLKEFLlenmriinfgltFEVAIHAIEgeGIVVQesdYKVTCCEAEHSIPALSYRLDEfdrpgafnve 163 Nitrososphaera vie...
A9A3X2     80 nrteSLEIFGPSGIEEFIaanikvlnfglsFPILINTIKd-EKIFEdekFLIRTCKANHSIIAFSYLFEEkdkpgrfnve 158 Nitrosopumilus mar...
EQB64893   84 grtePLEIYGPIGASSVLgnllsigyyslnFEIRIEELKgnGSINFg-dYSISYAKANHTIPALSYSLTEreyskleesk 162 Thermoplasmatales ...
EGQ43408   80 greePLYIYGPPRTEEFTdnildtgyfqrsFDIFVENIVe-GEEIVgegYQIKPFEVEHGVNAFGYVFEEeqkrkankdk 158 Candidatus Nanosal...
Q9HJ19     84 nrtkQLNIFGPHGAIKILsnalnvgyytlhFPLKIYELEp-DRTYDlgkFLIRTMLNDHPVPALSYSIEErdlvridpek 162 Thermoplasma acido...
Feature 1                                                      #                   #          
4GCW_A    162 vlkemnippgpvyqkikkgetvtledgriingndfleppkkGRSVVFSGDTRVSDKLKELarDCDVMVHEATFakEDRKL 241 Bacillus subtilis ...
EMR74332  162 kalklgvpegplfsklqkgksitlkngkritpdqvlgplrkARKIVISGDTIPYNKLINFacDADVLIHDATFdsELEDR 241 Thermoplasmatales ...
KON28213  159 kakdlgipkgplwkk-lqlgnnikikgnvirssevlgpkrpGSKIVYATDTKPCESVISLakNADVLIHDSTFdeDRKEK 237 miscellaneous Cren...
KON34150  165 kalnlgvpegilwsklqngrniklsngkivksadvtgplrkGRKIVYSGDTRPIENFYLFshGADLLIHESTFddSLIDK 244 miscellaneous Cren...
A0RYQ9    159 karglgvpegelwgt-lqggsavsvggrtvlpsdvlgegkrGRTVGFSGDTRPTDKLAEFfqGCDYLVFDSTFadEMVKR 237 Cenarchaeum symbio...
AIC14247  164 lvkkmgipegelysr-lqhgqdieyngkivrsadvvgpprpGRKIGISGDTRPTDKLTKFfsGCDVLVFESTYthDKLAK 242 Nitrososphaera vie...
A9A3X2    159 kakelgipegelwnk-lqngneitvnekiikpeqvlgerrpGKKIGISGDTMPTKELEEFfeECDYLVFDSTFleAEKQK 237 Nitrosopumilus mar...
EQB64893  163 ikemgvprhlleki---rkegsvqvngrtisledisagvrkGRKVSYSGDTRRDQSLLELfrNSTVLIHESTGekSNESK 239 Thermoplasmatales ...
EGQ43408  159 meelgigsspkvgk---lkrgeeiewegervspeeviqtveGRKIVYSGDTSKCENMIKYaeDADLLIHEATC--RHKII 233 Candidatus Nanosal...
Q9HJ19    163 areknipsriieki---rengsyvykgneyriddiaggvrkGRRIVYTGDTRPMDRMIEFarNADVLIHDTTTdsSFEPM 239 Thermoplasma acido...
Feature 1                                #                                  
4GCW_A    242 AYDyyHSTTEQAAVTAKEARAkQLILTHISARYqgdasLELQKEAvdvFPNSVAAYDFLEVN 303 Bacillus subtilis subsp. subtilis st...
EMR74332  242 ANEygHSTARQAAEIAKKANVeRLFLTHISPRYld--yRVLENDAqkvFKNSFVPKDFQEIE 301 Thermoplasmatales archaeon SCGC AB-5...
KON28213  238 ADEygHSTASQAANVAKKSNAtKLVLIHISAIYed--aEKLLKQAlkiHKKTVLAHDLMKIK 297 miscellaneous Crenarchaeota group ar...
KON34150  245 ALFdgHSTPSQVANLAKKADVkKLVLTHISARYpd--tEILLEQAkriFQNTIVAKDFLELE 304 miscellaneous Crenarchaeota group-6 ...
A0RYQ9    238 AREtgHSTAAEAAALAKNAGVkNLILTHFSARYsd--tDDLLREAqkiHPSSYAASDLLEVE 297 Cenarchaeum symbiosum A
AIC14247  243 ALEtaHSTATEAATVARQAGAkKLFLTHFSARYde--tSALVKEAsaiHANVEAAEDLKQVD 302 Nitrososphaera viennensis EN76
A9A3X2    238 AQDtcHSTAKQAATVAKNAKVkNLVLTHFSARYrd--eVEHLREAkeiHDSVITAKDLLEIE 297 Nitrosopumilus maritimus SCM1
EQB64893  240 VISygHSTGNDAGIQARDSNSrKLILIHFSPRYnd--iKPILEEArsvFQNVTAAEELMELE 299 Thermoplasmatales archaeon I-plasma
EGQ43408  234 DQRngHTSAKQAGKIAEKADVnKLVLTHISRRYqr-eeEELLAEAreeFKNTKIGEDGKEFS 294 Candidatus Nanosalina sp. J07AB43
Q9HJ19    240 VNEfgHSSSRQAARIARQARVgRLYLYHYSPRItd--tSVLLEDArkeFQETYESKDLMEYE 299 Thermoplasma acidophilum DSM 1728

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