Conserved Protein Domain Family
porin_porB_Neis

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NF040479: porin_porB_Neis 
trimeric porin PorB
This HMM describes PorB, a trimeric porin found broadly within the genus Neisseria, including in N. gonorrhoeae and N. meningitidis.
Statistics
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PSSM-Id: 468507
Aligned: 15 rows
Threshold Bit Score: 547.024
Created: 24-Apr-2023
Updated: 3-May-2023
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_003680041   1 MKKSLIALTLAALPVAAMADVTLYGQIKAGVEVSKVNlgektATALGKE-------KSSKTATEIADLGSRIGFKGHEHL 73  Neisseria flave...
WP_004466945   1 MKKSLIALTLAALPVAATADVTLYGAIKAGVQTYRSV-----GHQEGKV-------VSVETGSEISDFGSKIGFKGQEDL 68  Neisseria gonor...
WP_002254394   1 MKKSLIALTLAALPVAAMADVTLYGTIKAGVEVSRVKd---aGTYKAQG-------GKSKTATQIADFGSKIGFKGQEDL 70  Neisseria menin...
WP_003676773   1 MKKSLIALTLAALPVAAMADVTLYGTVKAGVEVSRTK------HSNAAGedkpivtTKDRVATEIADFGSRIGFKGHEHL 74  Neisseria cinerea
WP_003742791   1 MKKSLIALTLAALPVAAMADVTLYGQVKAGVDISRVKek-ttVNGVTTK-------DTTKTATEIADYGSRIGFKGHEHL 72  Neisseria
WP_003759347   1 MKKSLIALTLAALPVAAMADVTLYGQVKAGVEVSRTK-----ETVNHVS-------TKNKTATEIADFGSRIGFKGHEHL 68  Neisseria sicca
WP_004519667   1 MKKSLIALTLAALPVAAMADVTLYGQIKAGVEISKVK--------EGK--------TSSKTATEIADYGSRIGFKGHEHL 64  Neisseria subflava
WP_003748475   1 MKKSLIALTLAALPVAAMADVTLYGQIKAGVEVSKVKlgeqtAAKLGHE-------KSSKTATEIADFGSRIGFKGHEHL 73  Neisseria mucosa
WP_004283795   1 MKKSLIALTLAALPVAAMADVTLYGQIKAGVEVNRVK-----VGSGSSA-------EKSHTETKIADFGSRIGFKGHEHI 68  Neisseria weaveri
WP_009117296   1 MKKTLIALSLVALSGVASAEVILYGQVKAGVEVSQKK-----NRDNGVT-------TKNHTETKIADLGSRIGFKGTEHL 68  Neisseria wadsw...
WP_003680041  74 GSNLNAIWQVEQKTSIAGGDKEWASRESFIGLEG-GFGKVRAGKLNSTVKDSSNnADQWES---NNGALGLSVFTRVDKR 149 Neisseria flave...
WP_004466945  69 GNGLKAVWQLEQGASVAGTNTGWGNKQSFIGLKG-GFGTIRVGSLNSPLKNTGAnVNAWESgkyTGEFLEISKMAGREHR 147 Neisseria gonor...
WP_002254394  71 GNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKG-GFGTVRAGNLNTVLKDSGDnVNAWESgsnTEDVLGLGTIGRVESR 149 Neisseria menin...
WP_003676773  75 GNNLNAIWQVEQNASVAGTDKGWGTRESFIGLEG-GFGKIRAGKLNTVLKDSGDnVNVWESgseNADVLQLGTIGQMEER 153 Neisseria cinerea
WP_003742791  73 SNNLNAIWQVEQNTSVAGTDKGWGTRESFIGLEG-GFGKIRAGKLNTPLKDSSDsIDPWEAseaNSDVLALGKLERVEDR 151 Neisseria
WP_003759347  69 SNNLNAIWQVEQNTSVAGTDKGWGTRESFIGLEG-GFGKVRAGKLNTALKDNSDsVDPWESsdaNASVLQFGKLKRVDER 147 Neisseria sicca
WP_004519667  65 GSNLNAIWQVEQNTSIAGGDSGFANRESFLGLEG-GFGKVRAGNLDTALKNTSDsFDPWESsaaNADALQLGKIKRVDTR 143 Neisseria subflava
WP_003748475  74 GNNLNAIWQVEQNTSIAGGDKEWASRESFIGLEG-GFGKIRAGKLNSTVKDSSDnVDQWES---NNGALNMSVFTRVDER 149 Neisseria mucosa
WP_004283795  69 GNNLNAIWQVENKVSVAGGGS-WASRDSFIGLEG-DFGKVRAGKLSTQLKDMGA-VDPWEY---DSANLGLAQFTRTGTR 142 Neisseria weaveri
WP_009117296  69 GSGLNAIWQIEQKTPVSGGGS-WGTRDSFIGVEGeSWGKIRAGRLSTQLNDMDA-LDAWEY---NNPALGLGVFTRTGER 143 Neisseria wadsw...
WP_003680041 150 AVSVRYDSPVFAGFSAsVQYTPRDNANpsdk-ythnDAPRDTYYAGLNYENSGFFGQYAGGFRKNSVDttden------- 221 Neisseria flave...
WP_004466945 148 YLSARYDSPEFAGFSGsVQYAPKDNSG----------SNGESYHVGLNYRNGGFFAQYAGLFQRYGEGtkkieydnq-fy 216 Neisseria gonor...
WP_002254394 150 EISVRYDSPVFAGFSGsVQYVPRDNANdvdk-ykhtKSSRESYHAGLKYENAGFFGQYAGSFAKYADAervavn------ 222 Neisseria menin...
WP_003676773 154 KVSVRYDSPVFAGFSGsVQYVPRDNADpqdk-gkheQPSLDSYHFGVNYENAGFFGQYAGVYAKNKIVtndiqnlid-mn 231 Neisseria cinerea
WP_003742791 152 KVSARYDSPVFSGFSAsVQYQPRDNANpddk-fthdVKSRDSYGLGLNYENAGFFGRYAGSFAKHSVLdkdylnsfnrnt 230 Neisseria
WP_003759347 148 KVSVRYDSPVFAGFSAsAQYQPRDNANpedk-hvhdVKTRHSFDLGLNYENSGFFGRYAGTFAKRKVLsddhlelfnsnt 226 Neisseria sicca
WP_004519667 144 KVSVRYDTPVFGGFSAsVQYQPRDNANpsdk-ydhaVKSRESYDLGLNYENSGFFGRYAGSYAKRADLtsgyldafnhnt 222 Neisseria subflava
WP_003748475 150 AVSVRYDSPVFSGFSAsVQYTPRDNANpsdk-ythnDATRDTYYAGLNYENSGFFGQYAGGFRKNAVS------------ 216 Neisseria mucosa
WP_004283795 143 EVSVRYDSPVFSGFSGnVQFTPRDNAGdredatgkkLPTKAQYFAGLNYENAGFFAQYGFGLKKNNYTan---------- 212 Neisseria weaveri
WP_009117296 144 VISARYDSPVWAGFSFnAQYTPRDNQDdpgr--dsaLSDTSAYYGGVNYENAGFFAQYGVGYKKSAYVan---------- 211 Neisseria wadsw...
WP_003680041 222 --gkvtHKDGHVQRLVAGYDANNLFVSVAGQYaknweklgdyaQAQSN--GVVTKemrerttspvnasnvvfgtdatldG 297 Neisseria flave...
WP_004466945 217 sipslfVEKLQVHRLVGGYDNNALYASVAAQQ-----------QDAKLygTWRA-------------------------N 260 Neisseria gonor...
WP_002254394 223 tanahpVKDYQVHRVVAGYDANDLYVSVAGQY-----------EAAKN--NEVGSt----------------------kG 267 Neisseria menin...
WP_003676773 232 dddyvtGKDYQVHRLTAGYNANNLYVAVTGQH-----------QSYRI--HEAYDatset--------------sfaydD 284 Neisseria cinerea
WP_003742791 231 tlaadtYKDHQVHRLVAGYDANNVLVSVAGQY-----------EGFKA--DKAN-------------------------A 272 Neisseria
WP_003759347 227 tlgsgvYKDYQAHRLVGGYDANNVLVSVAGQY-----------EGFKA--DVAD-------------------------A 268 Neisseria sicca
WP_004519667 223 tlaagtYKDHQAHRLTAGYDANNLMVAVVGQY-----------EGFKA--DVAG-------------------------A 264 Neisseria subflava
WP_003748475 217 ------EKDGHVHRLVGGYDANNLFVSVAGQYaknwetlgdyaEAQSN--GVVTSamraagtnasn---vvfgtaagldS 285 Neisseria mucosa
WP_004283795 213 ----skNKDGYVHRVEAGYDANNLFVAAGYQAtkgwdtvatyqSALEG--VDATElantm---------------qptdN 271 Neisseria weaveri
WP_009117296 212 ----ndSKSAQAHRIHGGYDANNLFVGLGYQYtngwdsersyiSTIRGedAPANDn-----------------------S 264 Neisseria wadsw...
WP_003680041 298 KGVETVEVAATAAYRAGNVTPRVSYAHGF--KAKVDGKkLKGTQYDQVIVGADYDFSKRTTALVSTGWLRGAEsGSHKVE 375 Neisseria flave...
WP_004466945 261 SHNSQTEVAATAAYRFGNLTPRVSYAHGF--KGSVHSA-DYDNTYDQVVVGAEYDFSKRTSALVSAGWLQEGK-GADKIV 336 Neisseria gonor...
WP_002254394 268 KKHEQTQVAATAAYRFGNVTPRVSYAHGF--KAKVNGVkDANYQYDQVIVGADYDFSKRTSALVSAGWLKQGK-GAGKVE 344 Neisseria menin...
WP_003676773 285 GKASQTEVAATAAYRLGNVTPRVSYAHGF--KGKVEGEkQNHSGYDQVIVGADYDFSKRTSALVSAGWLQTGK-GESKAV 361 Neisseria cinerea
WP_003742791 273 KKNERTEVAVTGGYRMGNVMPRVSYAHGF--KAKENGEkQANSQYNQVIVGADYDFSKRTSALISAGWLREGK-GDNKYE 349 Neisseria
WP_003759347 269 KKNERTEVAVTGGYRMGNVMPRLSYAHGF--KAKENGVkQGNSQYNQVIVGADYDFSKRTSALVSAGWLKEGK-GGDKTQ 345 Neisseria sicca
WP_004519667 265 KKNERTEVGATAAYRFGNVTPRVSYAHGF--KAKEEGVkQENSAYNQVIVGADYDFSKRTSALLSAGWLKEGK-GDYKYE 341 Neisseria subflava
WP_003748475 286 RPAETIEVAATAAYRAGNVTPRVSYAHGF--KAKVDGEkLKGTQYDQVIVGADYDFSKRTTALVSAGWLRGAEsGPHKVE 363 Neisseria mucosa
WP_004283795 272 FALKTQEVAVTAAYRFGNVTPRVSYAHGWdvKNAAGGErAKGTKYDQVVVGADYDFSKRTTAMVSAGWLKQGK-GDDKLQ 350 Neisseria weaveri
WP_009117296 265 GRLKTHEAAATAAYTFGNVTPRLSYAHGF--KAKAGGNkVDGTNYKQVVLGADYDFSKRTTAMVSAGWLKAGS-GDNKTE 341 Neisseria wadsw...
WP_003680041 376 TISGLVGLRHKF 387 Neisseria flavescens
WP_004466945 337 STASAVVLRHKF 348 Neisseria gonorrhoeae
WP_002254394 345 QTASMVGLRHKF 356 Neisseria meningitidis
WP_003676773 362 TTAGMFGLRHKF 373 Neisseria cinerea
WP_003742791 350 KTAGTVGLRHKF 361 Neisseria
WP_003759347 346 STAGLVGLRHKF 357 Neisseria sicca
WP_004519667 342 KTAGTVGLRHKF 353 Neisseria subflava
WP_003748475 364 TISGLVGLRHKF 375 Neisseria mucosa
WP_004283795 351 RTGGLVGLRHKF 362 Neisseria weaveri
WP_009117296 342 NTAGLVGLRHKF 353 Neisseria wadsworthii
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