3FMC,3LWU


Conserved Protein Domain Family
M14_PaAOTO_like

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cd06250: M14_PaAOTO_like 
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Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like subfamily; subgroup includes Pseudomonas aeruginosa AotO
An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding P. aeruginosa AotO was characterized as part of an operon encoding an arginine and ornithine transport system, however it is not essential for arginine and ornithine uptake.
Statistics
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PSSM-Id: 349468
Aligned: 33 rows
Threshold Bit Score: 277.965
Created: 10-Dec-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteactive site
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[H] [ED] [H]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Metallocarboxypeptidases share the zinc binding motif HXXE...H, where the zinc ion is penta-coordinated to ND1 atoms of the histidines, OE1 and OE2 atoms of the glutamic acid, and to a water molecule in a slightly distorted tetrahedral manner.
  • Structure:3LWU: Shewanella frigidimarina Putative Succinylglutamate desuccinylase/aspartoacylase (YP_749235.1); contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                             #  #                                    
3FMC_A      7 HEVRVGEla--aGQPLsLPVYRFKGKGa--gPSVYIQANVHGAEVQGNAVIYQLXKLLEHYE----LLGDISLVPLANPL 78  Shewanella amazone...
ASG67802    7 EKIKVSQas--nGQNIfIEKIIIKGTNpk-aPSVYVQASMHASELQGNIVMIELLEYFKKHQ----PEGDVFLIPQCNPI 79  Francisella haliot...
PIK15726    8 RKITLSElp--sGEELsLKVIEVDGPFe--gPHCYIQASVHGAEHQGNAVIYKLLEYLEHNP----IIGKITLLPMANPL 79  Halobacteriovorax ...
3LWU_A     26 SSVQVGEla--tGQALtVPIYSFXGSEns-aPSVYIQANVHGAEVQGNAVIYQLXTLLEGYQ----VLGDITLAPLANPL 98  Shewanella frigidi...
EQC44373    5 EIISVDQi----GSNS-LDIYKYTIDQgnpgPTVYIQASVHGAELQGNLVIKNLINTLKSKV----VFGKIVLIPLANPF 75  Bacteriovorax sp. ...
ANN57260    6 ERIAGDSe----GVSYeFPVFRFAGADka-aPSAYLQAALHAGELPGVVAIDALMPALNKAAaegrIKGDITIVPWANPI 80  Mesorhizobium loti...
OAI50117    3 KRTHITTrqladGSTLtIPVFTFPGTNpq-aPQTYIQSSIHGAEIQGNGVILHLIEHFSKHP----PFGTIVLVPNVNPF 77  Opitutae bacterium...
OIQ17448    4 EIIKIDEv----GTSP-LNLYKYTLTGicegPSIYIQANVHGAEVQGNAAIFKLVEKLKDIE----FKGKITLVPQANPY 74  Bacteriovorax sp. ...
EQC43656    4 EKLITNElg--sGDNFsLKIIKLQGICednsKKVYIQANVHGAEVQGNAVIYHLIEALRNNLs--lIQGEIVLVPQANPL 79  Bacteriovorax sp. ...
NP_384414   4 SEIIIAGdt--pGVEWrLPVFRFKGASaa-aPRTYIQAALHANELPGTALLHFLLEKLRQADedgaILGDITIVPQANPI 80  Sinorhizobium meli...
Feature 1                                                                                     
3FMC_A     79 GINQKsgeftlGRFDpiTGVNWNREYLDHgfnievwyqehs----------hldddtlitafRATLVEECARRLNNPWGv 148 Shewanella amazone...
ASG67802   80 GADNFigaghqGRFDsaTGDNWNRYYFNPeinykafvtehi----------nssvakykkafERLLAEAIDKELKQEWFl 149 Francisella haliot...
PIK15726   80 ALNTKigtytfGRFNanTGDNWNRLYFDFtksskeisefaak-------hlssenidirkeyKKLLKELILNKKADHIEy 152 Halobacteriovorax ...
3LWU_A     99 GINQKsgeftlGRFDpiTGVNWNREYFDHnvdiqnwyaehq----------hltnselfcayRSXLVETCQARLTHSFGi 168 Shewanella frigidi...
EQC44373   76 ASSQKigtytfGRFNpvTGDNWNRNYHDVakkekegtigyidfkkfvnenqsnsveeikynfKSTLKDTLQKFRETQDSf 155 Bacteriovorax sp. ...
ANN57260   81 GRAQYhfgehqGRFHlgTRTNFNRAFPLL---------------------------------AAPDAKLLPDTSFGGAD- 126 Mesorhizobium loti...
OAI50117   78 SINQRlgdygySRFDpnTGDNWNRLYANItcptssektaddqivieeflkkiatnapipeviKKLQTEILDRLQKRLENh 157 Opitutae bacterium...
OIQ17448   75 GSSVKmgtytyGRFNpvTGDNWNRMYLDFlsqkegqgrinidqfv--lehghkeeadivrlfKELISQKIQEYRDFHSPy 152 Bacteriovorax sp. ...
EQC43656   80 GSNQKvgtwtyGRFNpiTGDNWNRMYKDVlkneealntlak---------ehkddattskklKKLLKEKIQAMKQSLSSy 150 Bacteriovorax sp. ...
NP_384414  81 GAAQAhfgelqGRFDlgSRTNFNRDFPLI---------------------------------SLGERDGLLDEPDRYSAi 127 Sinorhizobium meli...
Feature 1                              #                                                      
3FMC_A    149 t--tgHRLAVTLQSXAHRADIVLDLHTGPKSCKHLYCPEy----eRSAAQYFSIPYTLLIPNSFggAXDEAAFVPWWTLA 222 Shewanella amazone...
ASG67802  150 s--raKRLNYTVQKEAQKADYVLDLHTDTDATTYIYTPEf----aKKTAELFGYKHTLVIPNEFsgALDEAIFVPWWRLQ 223 Francisella haliot...
PIK15726  153 gpkhnGLLNLTLQELATDSDYVLDLHTGGVATRYLYVPEy----lEDRSKDLHFPHRLIIPNEFggAMDEATFMPWVNLQ 228 Halobacteriovorax ...
3LWU_A    169 s--tgHRLAVNLQAXAHQADIVLDLHTGPKSCKHLYCPEy----dIDAARFFSIPYTLIIPNSFggAXDEATFCPWWQLT 242 Shewanella frigidi...
EQC44373  156 gisdnKDLFTTLQLLASEADIVLDLHTGPIATRYLYAPQy----lKEKSKDLNFPFTLLIDHEFagAMDEATFYPWVRLK 231 Bacteriovorax sp. ...
ANN57260  127 -----QRLKSRLVQLSLGHDIVLDLHCDDEGLAYLYIHTslwpamADCAAAMGVDAVVLWSEDTd-GTFEGASIMPYQNV 200 Mesorhizobium loti...
OAI50117  158 rssygQKLALQIQAMASKADIVLDLHCDTISLPHLYSPHy----aINSAREFNIPYLISIPEKFagALDEACFCPWANLA 233 Opitutae bacterium...
OIQ17448  153 eisenKNLFIKLQEMAADADMVLDLHTGPIATRYIYTAEy----lKDKCTDINFAHYIVIPNEFggAMDEATFNPWVKLY 228 Bacteriovorax sp. ...
EQC43656  151 gpnenSIHFLNLQELASDADIVLDLHTGPIATNYLYVPAf----lEEESKHLGFNHMLIIPNEFgtAMDEATFMPWVHLQ 226 Bacteriovorax sp. ...
NP_384414 128 -----DRLKRHLLDMALGAELVLDLHCDDEGLQYAYIDEafwpeaADLAAALDMEAVFLSDGQSs-AFEEAVAHAWKHES 201 Sinorhizobium meli...
Feature 1                                                        
3FMC_A    223 EVAsshGRELGVRv--SALTLELGSQERIDLDDALEDAEGILAYLSHRGVI 271 Shewanella amazonensis SB2B
ASG67802  224 EEFriqGRQEDVIk--ECFTLELGSEEYISFDDAITQTQGVLNYLKSKNII 272 Francisella halioticida
PIK15726  229 SEFkklGREFEIPf--ESYTVELGSEEMISLEEAQTDLLYILNYLHHRGIV 277 Halobacteriovorax sp. JY17
3LWU_A    243 EYAtsqGREFSVPv--SAFTLELASQERIDLADALEDAKGILAYLSHRGVI 291 Shewanella frigidimarina NCIMB 400
EQC44373  232 EELeiaGIAFENTf--ESYTVELGSEEIIDSKAADIDTANILNFLKARSVI 280 Bacteriovorax sp. Seq25_V
ANN57260  201 PAD---VAKFDRR---VATTVEYRGILDVDGALAKADAEGLYRLLVARGVV 245 Mesorhizobium loti NZP2037
OAI50117  234 QVWn--NTQYPEPh-vEAFTLEFGSQEILDLDTAKEQALSIIHYLSTKHVC 281 Opitutae bacterium SCGC AG-212-L18
OIQ17448  229 SALkekGRILEHLf--ESYTVELGGEEYISMNDAEVDADNILNLLHKRGVL 277 Bacteriovorax sp. MedPE-SWde
EQC43656  227 KALk--EHEIDYKipfSSYTVELEGEELIDLERAKIEASKICQYLVYKKVL 275 Bacteriovorax sp. BSW11_IV
NP_384414 202 EGEr--RTALPGR---LSVTVELRGTRDVYPDIARKDSEGMFRFLAGRGVV 247 Sinorhizobium meliloti 1021

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