2CHQ


Conserved Protein Domain Family
HolB

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COG0470: HolB 
DNA polymerase III, delta prime subunit [Replication, recombination and repair]
Statistics
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PSSM-Id: 440238
Aligned: 632 rows
Threshold Bit Score: 60.3739
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2CHQ_A        22 QDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGenw--------------------------------- 67 
NP_296053     17 HGPLLEQTGSF-----GGNaLLLSGPARVGKLDLAYAIAAQHNCsgprgmygeacgq----------------------- 68 
WP_012031517   7 INLAHNRLN--LYTKQPPHcLLFIDPQQQNAFFTAQLFAAAVLCfhahqgiachdc------------------------ 60 
WP_012675672   6 HEETKEIIRLYLDKKYSSYsLLFEGKDCIGKKLIALKTAKGFLCekrygfgcdscescrlv---------------rnti 70 
WP_083775779  21 SSLMWSELKKALEGNRFPQsLALS-APKQYHEKIAIDIARLLLCekknacgqcls------------------------- 74 
YP_145126     14 HEAVLALLPRL-----TAQtLLFSGPEGVGRRTVARWYAWGLNRgfppps------------------------------ 58 
WP_083779959  21 SGGGWLQLRRWLRRGEWAHaYLFVGPETGDQDQAAEYFASGVLCedranppcgscp------------------------ 76 
WP_012964445   2 HHKAKKLLESMYKLGRVPSsLLFFGKEGVGKKTVAFDFAKALLCmkrtfpacndcpscfhmnefskkpveelrvysdtst 81 
WP_013703018  13 HEEVRARLPTF-----RAQsFLFTGPEGVGRRQVARWFAYGLNCqegfppcgrc-------------------------- 61 
WP_011163573  11 HQETIKKMVESFENGKPGQtFLFVGPGGIGKKLTAMGLAQALLCpssprgcgkcp------------------------- 65 
2CHQ_A        68 -----------rdNFIEMNAs-----------dERGIDVVR-------Hk----------IKEFARTAPIGGaPFKIIFL 108
NP_296053     69 cpscralqagahpDVLRLEPrattstgkaarkrIIPIGAVL-------EsrdtgreyethVYEFLEVRP-TF-ERRVVIV 139
WP_012031517  61 -qschliergthpD-AFFYPq------------PIKIEEIR-------A-----------LITKTTMTPALS-ARRVVFL 107
WP_012675672  71 sniydktdlnphpDIKIVSPed---------gkEIKIGQIR-------D-----------VISFLKLKTKEG---KVVII 120
WP_083775779  75 ---ccswhekthpDLVLSGsl----------ekAPTISECR-------E-----------IAVELSLYPVVA-SCRLVVI 122
YP_145126     59 --------lgehpDVLEVGPkardl----rgraEVRLEEVA-------P-----------LLEWCSSHPRE--RVKVAIL 106
WP_083779959  77 --scrrlahgnhfGLVQVYPdg----------qSIKIDQLR-------E-----------LQRFFSLRAIER-ENRVYII 125
WP_012964445  82 grkvflylqgdhpDFIYLQPek----------dEIKIDQIR-------G-----------VIDFVNLRPALS-PKKVVLV 132
WP_013703018  62 ----ascrlephpDYLEIRPetetktgrkarraVIRLEQIVpraeedrEs----------LVGWLETRPRF--RAKIAVI 125
WP_011163573  66 --scfrisqgsheGLKLIAPng----------aNIKMEQAK-------E-----------VLEFLSLKSLT--GNRVIVI 113
2CHQ_A       109 DEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK---------PVPKEAM-KKRLleicEKEG 178
NP_296053    140 AGAEYLNPQAANALLKLVEEPPHRALFLFLAEDLRSVLPTIVSRSARLSVV---------PASDTAM-SRAL----IQSG 205
WP_012031517 108 GQIDDYSEEALNTLLKTLEEPSPHSLFILSARNRHAVKATIISRAHCISLV---------KPRFEDA-LAWL----QEQG 173
WP_012675672 121 EKAERMNRESSNALLKTLEEPPENTLIILTTSNQNALLPTIVSRCQKIKFR---------PLSKEEI-LSIL----KLKG 186
WP_083775779 123 QSADTLLLPAANSMLKIVEEPPEHGVILFLLEN-DKFLPTLKSRCWNLALAheerfepeeIPSAERSwKKWL----ES-G 196
YP_145126    107 DSAHLLTEAAANALLKLLEEPPSYARIVLIAPSRATLLPTLASRATEVAFA---------PVPEEAL-RALT----QD-- 170
WP_083779959 126 HGADRMTPEAANSLLKFLEEPASGTVGILTAKRPEGVLATVRSRCQVLRFS---------APRPEVLyREWT----SR-G 191
WP_012964445 133 WPAEAMNPYSQNALLKTLEEPPEDTHFILVCNMLDRILPTIRSRSYTVEFE---------ELSEEDI-KKLT----GIE- 197
WP_013703018 126 DGAHHLGESAANALLKLLEEPPGYARLILIAPSRELVLPTLASRTLEVRFG---------PVDEATL-SRFT----QD-- 189
WP_011163573 114 DQAQTLNPQAANSLLKTLEEPPEGTFFFLIAPSVAGILPTIRSRSRIVQFR---------PLTQEDL-GKRV----KA-- 177
2CHQ_A       179 -VkiTEDGL--EAL----I-YISG-GDFRKAIN-----ALQ--------GAA-AIGeV-----VDAdtIYQITATAR-P- 228
NP_296053    206 -Q--EAd----EEL----L-AFAA-GRARVLSE-----AEA---------VRaALAdA-----RTL--TTALEDGLLtA- 250
WP_012031517 174 -F--SEKAA--TAA----L-RYSH-HDPYRAAQ-----YLKn------eSFRpf-------elLTL--LADFfayp-qey 221
WP_012675672 187 -V--DESKA--KIL----A-SLSEgsmclpmmilnnenlfkyakdlynllavknlhpegiinlaeildrletneifiifd 256
WP_083775779 197 eT--MTIEeleKQLhcweTwAIEE-GQASLAARvdrlrLIC------------ESRkLpqgmvLDL--Il---------- 249
YP_145126    171 -----------PEL----L-RYAA-GAPGRLLR-----ALQdpegyrarmaraqrvlkapplerlallrellaeeegvha 228
WP_083779959 192 -V--GEEMAr---Lfa-yL-GLSDtGCGEDADK-----EADgenpldtaVFAdIARwV-----VEW--VQAVEEHKGkPl 251
WP_012964445 198 -------D---RVI----L-SLSE-GSITK--Akelsqkshiidmakkvlsgsvldvyklstqlenlsyedqklflhtle 259
WP_013703018 190 -----------PAL----L-AYAE-GAPGRLVA-----ALAdp-----gGLErMRAaV-----DRL--LEALer------ 229
WP_011163573 178 -----------PAwalkaaggsfeklaqlqdgpeqevrekavelltlfiqdadfllnelwrnefkdraqgqrmisywigf 246
2CHQ_A       229 EEMTELIQ----TAlkgnfmEARE---LLDR--LMveygmsgedivaQLFRE---------IIS---------------- 274
NP_296053    251 LDAAAALEk------------------RWDPtwHP------------Eal---------rfAWRerlp------------ 279
WP_012031517 222 CAL-LEVLek---------iPAEH---IVDV--LT------------VHLEQ---------LITikqldi-----vppdw 260
WP_012675672 257 ilekiiykkslkgevplglyenfldeyslfkkavekgvkkklaveglyfnlkt--------------------------- 309
WP_083775779 250 LSLKEGFAf--------------Eh--VFDN--LW--------------------------------------------- 266
YP_145126    229 lhavlkrpehllalerarealegyvspelvlarlaldlet---------------------------------------- 268
WP_083779959 252 LELFSRVGrgqwSTp--------EclwLLDV--LA------------CWYRD---------VLYtslglsdqvvfidhrr 300
WP_012964445 260 amlhkkmlenkenyeiyerlidrtvlvsdnlkrglklslfvfylkillsevv---------------------------- 311
WP_013703018 230 --pAEALEa------------------ALEVr----------------AVAEgpfapwaywAWRlsewp----------- 262
WP_011163573 247 lkdaiclqegaktqivnldqaplikvlaelerprilnliqkalqveqafaanrdpqliieefyvtska------------ 314
2CHQ_A       275 -MP-IKD-----SLKV---QLIDKLGEVDFRLT----EGANERIQL-DAYLAYLST 315
NP_296053    280 ---------qqrARAD------LALSALEAALE----AYANPALSF-QVFALALRE 315
WP_012031517 261 hNLrLAErl-kpADLAnmhRVYAKLCQLRRPNQrqlnLVLNAKIFLlELFNLRMKS 315
WP_012675672     --------------------------------------------------------    
WP_083775779     --------------------------------------------------------    
YP_145126        --------------------------------------------------------    
WP_083779959 301 eLSsQAArhgsiALLV---ERMGEVIEAKRRLQ----AHANPQLTL-ERMVLRLQE 348
WP_012964445     --------------------------------------------------------    
WP_013703018 263 --------paarAEAL------EVLAELQEALE----AYVSEELAY-AWAVLELRR 299
WP_011163573     --------------------------------------------------------    
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