Conserved Protein Domain Family
E_set_Isoamylase_like_N

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cd07184: E_set_Isoamylase_like_N 
N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins
E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase.
Statistics
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PSSM-Id: 199892
Aligned: 41 rows
Threshold Bit Score: 76.1264
Created: 2-Feb-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_003390577  14 AKVTFELSAEav---ngAKTVALAGEFNGWDa--QALKKq---kDGSYKTTVELPVGgEYQFRYILDGtTWTNDTAADKY 85  Spirosoma lingu...
YP_001634653  12 VRVTFSLPASl-----wADTIYLVGDFNGWNphaTPLRAt----EHGWMITLDLEAGrTYQYRYLVNGnEWHNDWNADGY 82  Chloroflexus au...
ZP_01899528   13 ADITFELACDtnnalmsDDTVELFADFNDWQa--LPMKYik--kEKVFRTKVRLPENkQFHFRYLINSnEWHNDHKADLY 88  Moritella sp. PE36
CBX28665      34 QPMLFQYEGQ-------AQSVCLAGDFNKWSpnsHCMNKq----GSLWYIRLMLPAG-IHRYAFIVNGqQWVVDPKALFI 101 uncultured Desu...
YP_002760469 101 MGVRFAVMAPg------VQRVSLVGDFNGWDadaTPLVLsp--dGSTWTTMLPLSAG-RHTYAFVIDG-QIVRDPVAPAE 170 Gemmatimonas au...
YP_446850    148 VLTRFVYTNDt------ADSVAVAGDFNDWTp--VPLSPhtvngETVWTGLVPVPRG-EHEYQFVINGeRWVTDPLAPVQ 218 Salinibacter ru...
YP_002762143 115 GEIRFELTLPs-----tARAVSIVGDFNGWDekkTPMAKrg--dEGTWSVRLPLSPG-RYTYAFVVDGrEWLVDALAPQV 186 Gemmatimonas au...
YP_002763411 156 IPVQFMLDARev---agGTTVSLVGDFNDWDvnaIPLTLd----NGVWSATLPLPPG-RHVYAFVVNGkRWIADPRAPQA 227 Gemmatimonas au...
ZP_03631480   21 KPVNFIYFAPq------AQSVFLIGDFNDWDpnaFPMKKq---pDGAWLIQIPLPHG-HHHYQYLVDG-KPVLDPKAQGI 89  bacterium Ellin514
AEM21479      58 DGVLFTFAEN-------YDSVEVSGDFNNWEd-sIPLIKss-ygVYYYLWQHPLKAG-KYTYRYRVNG-VWINDPVNANI 126 Brachyspira int...
YP_003390577  86 vpsgvsYEENSVVVL 100 Spirosoma linguale DSM 74
YP_001634653  83 apn-pyGGNNSVVET 96  Chloroflexus aurantiacus J-10-fl
ZP_01899528   89 lpn-sfGTDNSVVST 102 Moritella sp. PE36
CBX28665     102 end-gfDRQNSVVII 115 uncultured Desulfobacterium sp.
YP_002760469 171 aee-dfGMPNSVVLV 184 Gemmatimonas aurantiaca T-27
YP_446850    219 qdd-gfGAKNAVLKL 232 Salinibacter ruber DSM 13855
YP_002762143 187 pda-gfGPANAVIVD 200 Gemmatimonas aurantiaca T-27
YP_002763411 228 pda-dfGRPGSVILV 241 Gemmatimonas aurantiaca T-27
ZP_03631480   90 arn-ekNEKVSLLAV 103 bacterium Ellin514
AEM21479     127 e----yDNNNQVVSY 137 Brachyspira intermedia PWS/A
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