4LJZ,4G7H


Conserved Protein Domain Family
RpoD_Cterm

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TIGR02393: RpoD_Cterm 
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RNA polymerase sigma factor RpoD, C-terminal domain
This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. [Transcription, Transcription factors]
Statistics
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PSSM-Id: 274108
Aligned: 19 rows
Threshold Bit Score: 363.157
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4LJZ_F       284 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 363 Escherichia col...
P59117       347 AKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPV 426 Leptospira inte...
BAD04713     217 AKDILVESNYRLVVSIAKRYIGRGILFLDLIQEGNMGLMRAVDKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPV 296 Onion yellows p...
AAP77142     384 AKAKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKKGFKFSTYATWWIRQAISRAIADQARTIRIPI 463 Helicobacter he...
P47491       246 AINQLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAISKFNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPV 325 Mycoplasma geni...
AAP56739     394 AINQLVTSNLRLVTSIAKKYLNRGLDFVDLIQEGSIGLMKAISKFNYKLGNKFSTYATWWIRQAITRAIADQARTVRIPV 473 Mycoplasma gall...
WP_011056465 182 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 261 Thermosynechoco...
WP_010880967 338 AKQVMIQSNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 417 Aquifex aeolicus
WP_006688487 193 GKNQLYTSNMRLVTSIAKKYLNRGLDLEDLIQEGSSGLLKAIDKFDHEKGHKFSTYATWWIRQSITRAIADQARQIRIPV 272 Ureaplasma parvum
P52323       391 AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPV 470 Borrelia burgdo...
4LJZ_F       364 HMIETINKLNRISRQMLQEMGREPTPEELAERML------------MPEDKIRKVLKIAKEPISMETPIGD--DEDSHLG 429 Escherichia col...
P59117       427 HMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLG------------WPVQKVKMVKNVAREPISLEIPVGS--EEDSELG 492 Leptospira inte...
BAD04713     297 HIVETINKMALCTRKLTQKLKKKPTVEELADKMN------------ISAEKIRSIQYIEKKPISLEAPAREneEDETSLG 364 Onion yellows p...
AAP77142     464 HMIETINRIHKIMRKHVQETGKEPDIDFIAKEVG------------LPIDKVKNVIKITKEPVSLDAPIGS--DDDGKFG 529 Helicobacter he...
P47491       326 HMVETINRLAKAERALYQELGREPTDEELAEKMGgqa-------egFNVKKIAEIKRLSLDPVSLDKTVGH--DEESQFG 396 Mycoplasma geni...
AAP56739     474 HMVETINKLIKTERMLTQQLGRDPTLEELTEAMGgqv-------ngFTPKKVADIKKLNQEPVSLDKPIGH--DEESQFV 544 Mycoplasma gall...
WP_011056465 262 HLYETISRIKKTTKLLSQEMGRKPTEEEIADRME------------MTIEKLRFIAKSAQLPISLETPIGK--EEDSRLG 327 Thermosynechoco...
WP_010880967 418 HMIETINKIIKASKKLFQENGREPTPEEIAEYLD------------IPVEKVKKVMKFSQEPISLETPIGD--DDDTFLK 483 Aquifex aeolicus
WP_006688487 273 HMVETINKLTKAERNLIQELGRDPTAEEIAQAMNkvsqaknqkeqlITAQKVVEIKKLNVDPVSLDKQIGH--DEESQFS 350 Ureaplasma parvum
P52323       471 HMIEQINRLNRETRYLIQVLGKDPTDEELSDRLG------------WELKKVKTVKSVSREPVSLETPIGE--EEDSVLS 536 Borrelia burgdo...
4LJZ_F       430 DFIEDTTLELPLDSATTESLRAATHDVLA-GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKL 507 Escherichia col...
P59117       493 DFIPDTEVETPVNAAASSILAEQIRQVLH-TLPAREQKVIRMRFGLDDG-YPQTLEEVGYQFKVTRERIRQIEAKALRRL 570 Leptospira inte...
BAD04713     365 DFISDPNILSPHEYMMKEVTQKLLDEVLEnTLTDREEKVLKMRYGLLDG-KTHTLEEVGTLFGVTRERIRQIESKALRRL 443 Onion yellows p...
AAP77142     530 DFVEDKSSVGPMDYILKEDLKVQIDEVLE-QLNDREKAVIRMRFGLLDDeSDRTLEEIGKELNVTRERVRQIESSAIKKL 608 Helicobacter he...
P47491       397 DFVKDTDAQTPDEFTESRSNSEKIDELLNnNLSEQEELIVRMRIGMPPYnEPKTLDEVGQKILIPREKIRQIENKAIRKL 476 Mycoplasma geni...
AAP56739     545 DFVKDRDILKPDEYTEKLIVTEHINELFInTLTKKEEQIIRMRYGLHPWhQQMTLEEVGQKFNVTRERIRQIESKALRKL 624 Mycoplasma gall...
WP_011056465 328 DFIES-DGETPEDQVSKHLLREDLETVLC-TLSPRERDVLKLRYGLDDG-RMKTLEEIGQLFNVTRERIRQIEAKALRKL 404 Thermosynechoco...
WP_010880967 484 DFIEDKSIPNPEEQVTRKLLREQLQKVLS-TLSEKEREILMYRYGLVDG-TEYTLEQVGKMFNVTRERIRQIENKALRKL 561 Aquifex aeolicus
WP_006688487 351 DFISDDEIISPEKYTEKKALNDQINEMFEkVLNDNEQRVIKMRYGLLPFeRPYTLEEVGEYLGVTRERARQIESKAIRKL 430 Ureaplasma parvum
P52323       537 DFIEDKAIKNPANHTSFVVLQDQIRAILG-TLPEREQEVVKMRFGLEDG-YSLTLEEVGLHFNVTRERIRQIESKALRRL 614 Borrelia burgdo...
4LJZ_F       508 RHPSRSEVLR-SFLD 521 Escherichia coli K-12
P59117       571 RHPSRSKKLK-DYID 584 Leptospira interrogans serovar Lai str. 56601
BAD04713     444 RTPAKQSKLK-SLYH 457 Onion yellows phytoplasma OY-M
AAP77142     609 KHPKVGRKLK-NYIE 622 Helicobacter hepaticus ATCC 51449
P47491       477 RHAVRNNPISmSFLR 491 Mycoplasma genitalium G37
AAP56739     625 KHPSKNARLR-SFLK 638 Mycoplasma gallisepticum str. R(low)
WP_011056465 405 RHPNRNSVLK-EYIR 418 Thermosynechococcus elongatus
WP_010880967 562 RHPARAKYLK-DFEF 575 Aquifex aeolicus
WP_006688487 431 KHPSKTAKLR-SFIG 444 Ureaplasma parvum
P52323       615 KNPKKTQKLK-DYLE 628 Borrelia burgdorferi B31
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