Conserved Protein Domain Family
NrdE_NrdA

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TIGR02506: NrdE_NrdA 
ribonucleoside-diphosphate reductase, alpha subunit
This model represents the alpha (large) chain of the class I ribonucleotide reductase (RNR). RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Class I RNR's generate the required radical (on tyrosine) via a "non-heme" iron cofactor which resides in the beta (small) subunit. The alpha subunit contains the catalytic and allosteric regulatory sites. The mechanism of this enzyme requires molecular oxygen. E. Coli contains two versions of this enzyme which are regulated independently (NrdAB and NrdEF, where NrdA and NrdE are the large chains). Most organisms contain only one, but the application of the gene symbols NrdA and NrdE are somewhat arbitrary. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]
Statistics
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PSSM-Id: 274170
Aligned: 19 rows
Threshold Bit Score: 643.666
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P26685        116 LLGIETMKNSY-LLKNKDgVIMERPQDAYMRVAIMIHGMgr-vvNMKMILLTYDLLSRHVITHASPTMFNAGTKKPQLSS 193 African swine ...
AAT89523      214 YIGVVTLNNRYgIKARNGd-SLEVPQYFWMRIAMGLSLNet--dpTSHAIAFYHKMSKLEYLAAGSTLVNAGTAYPQLSN 290 Leifsonia xyli...
CAD46099       93 FMGALKFYNAYaLKTEDNrY---YLEHYEDRVVMNALFLaagdeKAAYDLVDDMLANRFQPATPTFLNAGKKR-RGEYIS 168 Streptococcus ...
novoz:BL01192  94 FMSAFKFYNDYaLKTNDKkK---ILERYEDRISIVALFFangdkEKAKEFVRMMINQEYQPSTPTFLNAGRKR-RGELVS 169 Bacillus liche...
AAM00816       91 FMACQKFYESYaVTQYDKdDNPIFVEDYEQHNVREALYLfqddyVKAREMLIQLMEQTLQPATPVYLNSGLGK-RGELSS 169 Staphylococcus...
AAU05233      179 SGGLKQFFDKYsRRNIATgEIYETPQFAYMGMAMAMLSqp--nwTILDAIDLYNAMSLHKINVPTPPLVGLRSSDRGFAS 256 Enterobacteria...
AAQ14827      136 YAVLKQFRDKYgIRDIKTgRLFESPQFMFMGMAMKAFEKqpkhrRLQDVIKLYTYLSDLKINAPTPYLNGLRATKSGYAS 215 Salmonella pha...
BAD49443      235 YSGLDLLVKRYlIRTR-LhEPAESVQEMYLGIALHLAMPeqk-erMTWVKKFYDLLSRLEVTMATPTLSNARKPYHQLSS 312 Bacteroides fr...
P74240        171 YAGAVLLTSRYlL-------PNELPQEALLTCALLLASVeapdrRLQWARRFYESIAARRISLATPILANLRVPGGSLTS 243 Synechocystis ...
AAS13943       16 DFGKAVLSDRYlIENESYqDLFARIANYYSDNKE-------------HAQRLYDYMSNLWFMPSTPILSNGGTKRGLPIS 82  Wolbachia endo...
P26685        194 CFLLN-VNDNLENLYDMVKTAGIISGGGGGIGLCLSGIRAKNSFISGSGLRSNGIQNYIVLQNASQCYANQGGLRPGAYA 272 African swine ...
AAT89523      291 CFVME-MQDDIEHIAKSVRDVMWLTKGTGGIGLSVTKLRSQGSPIRSNNTTSTGPIPFMHTIDSVLRAVSRGGKKFGALC 369 Leifsonia xyli...
CAD46099      169 CYLLRiEDN-MESISRAISTSLQLSKRGGGVALCLTNLREFGAPIKGIKNQATGIVPVMKLLEDSFSYANQLGQRQGAGA 247 Streptococcus ...
novoz:BL01192 170 CFLLEvNDS-LNDISRAIDISMQLSKLGGGVSLNLSKLRAKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSGA 248 Bacillus liche...
AAM00816      170 CYLFIvDDDTIESINFITDSVRQASKNAGGCAVDLTRLRPRGTEVNGVPNASKGVIPFAKNIEQSVSYFNQGGKREGSAV 249 Staphylococcus...
AAU05233      257 CCLVDsTDT-LDSIDTAEHIVFKMVAARAGIGYHL-ESRSIADPVRNGAFPHSGKLPYYRHIDRSVKANTQQ-TRGGSAT 333 Enterobacteria...
AAQ14827      216 CCLIKaNDT-AESLGIAAKVAYDMTTKQAGIGMLM-ETRTIGDGIRQNTIEHMGKLPYYKLVRSSVEANKQK-SRGGSAN 292 Salmonella pha...
BAD49443      313 CFIDTvPDS-LEGIYRSIDNFAMVSKFGGGMGMYFGKVRAAGGNIRGFKGVAGGVIRWMKLVNDTAVAVDQLGMRQGAVA 391 Bacteroides fr...
P74240        244 CFIVAmEDN-LESIFGEITNAARISKNGGGVGVNVSRIRATGSWVMGKPNASGGVIPWTKLLNDTAIAVNQGGRRAGAVT 322 Synechocystis ...
AAS13943       83 CFLNEt-EDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIGESVKGSG-KTSGIVPFIVVQNALTLAISQGSLRRGSSA 160 Wolbachia endo...
P26685        273 VYLELWHQDIFTFLQMPRLKGqmaEQRLNAPNLKYGLWVPDLFMEILEDqihnrgDGTWYLFSPDQAPNLHKVFDlersq 352 African swine ...
AAT89523      370 FYMENWHLDFPEFLDLRQNSG---DPYRRTRTANTAVWTSDEFMKRVQN------DQDWYLFDPLEVADLNELYGka--- 437 Leifsonia xyli...
CAD46099      248 VYLHAHHPEVLTFLDTKRENA---DEKIRIKSLSLGLVIPDITFELAKA------NKDMALFSPYDIERVYGKPMsdi-- 316 Streptococcus ...
novoz:BL01192 249 AYLNIFHRDINDFLDTKKISA---DEDVRVKTLSIGVVIPDKFIELARE------DKAAYVFYPHTVYKAYGEHLdem-- 317 Bacillus liche...
AAM00816      250 CYLNIFHPDIHEFSSSKKINA---SDKVRLDTLSIGVTIPNKFMELLKE------DKYYYTFNVYDVKQKYGFTLnei-- 318 Staphylococcus...
AAU05233      334 VSYPYFDPEIIQLMQVKQQRA---TDENKIDKMDYSLSFNNLLLKRYLK------NEDITLMSYFYAPEVHEAFYsdde- 403 Enterobacteria...
AAQ14827      293 NFYTALDPQIEDLLRLKHPTT---VPSKRINEMDYSFGTNDYFWQCVQY------DTDWLLFSYKDAPKLYDMFYtas-- 361 Salmonella pha...
BAD49443      392 VYLDVWHKDLPEFLQLRTNNG---DDRMKAHDIFPSVCYPDLFWKMAKEd----lNQPWYLFCPNEIMTIKGYCLedyyg 464 Bacteroides fr...
P74240        323 VGLDVWHLDVPEFLEMQAENG---DQRRKAYDIFPQLILPDEFMRRVIN------KEDWTLVDPYEVREKMGIELaelwg 393 Synechocystis ...
AAS13943      161 VYLPVSHPEIEEFLDLRKPTGg--DPNRKALNIHHAVIVTDKFMQAVEN------DQEWNLISPHNNKVIS--------- 223 Wolbachia endo...
P26685        353 henahREFKKLYYQYVAEKRYTg---------VTTAKEIIKEWFKTVVQVGNPYIGFKDAINr-KSNLSHVG--TITNSN 420 African swine ...
AAT89523      438 ---fsERYAEYAVMAEAGELRMf--------kKISARAQFKDILMSLQTTSHPWLTWKDTINn-RALNNNTG--AIHLSN 503 Leifsonia xyli...
CAD46099      317 --sitEEYETLLANADIRKT------------FISARKLFQTIAELHFESGYPYILFEDTVN--AKNPHK-KegRIVMSN 379 Streptococcus ...
novoz:BL01192 318 --dmnEMYDRLVEDPRVKKE------------KIHPRKMLEKLAMLRSESGYPYIMFQDNVN--NVHANN-HisKVKFSN 380 Bacillus liche...
AAM00816      319 --nmsEYYDIFVNDDDIRKE------------KYYTRDIMTDIARTQLESGYPYVFYIDNAN--DNHPLK-KlgKVQMSN 381 Staphylococcus...
AAU05233      404 -akfeEIYVAAEKRVASLTKIDhegktvptapKVSAKEILDTWLRIRMETGRMYAHHIGESN--RHGNFLd---PIRMTN 477 Enterobacteria...
AAQ14827      362 ---adEFAMAVGHAVHSGVKHR----------RVKAREIAKLFIQQRYATGRVYPFFTNNAN--THTPFKe---PLKMSN 423 Salmonella pha...
BAD49443      465 -eeweKRYHDCVN--DTRLSKr----------SISIKDIVRLVLRSAVETGTPFTFNRDTVN--RANPNA-HrgIIYCSN 528 Bacteroides fr...
P74240        394 -eqfeGAYREIESNLDTTITLYk---------RINARELFKQIMRTQVETGMPYLSFKDTIN--KANPNK-HlgYIPGTN 460 Synechocystis ...
AAS13943      224 --------------------------------TVKARDIWIKILTARVETGEPYIIFLDATNnnKPESYKKLnlDIKMSN 271 Wolbachia endo...
P26685        421 LCIEITIPCWEgn--------------------eAEQGVCNLAAVNLAAFIRESS------YDYRGLIEAAGNVTENLDN 474 African swine ...
AAT89523      504 LCTEITLPQDRd-----------------------NVSVCNLASINLSRHLVDGErangleMDWARLEESARQAVRQLDN 560 Leifsonia xyli...
CAD46099      380 LCSEIAQVNTAsqfsed-----------ltftkvGHDVCCNLGSINIAR-AMDQAa---------dFEKLIANSIRALDR 438 Streptococcus ...
novoz:BL01192 381 LCSEVLQASQVssytdy-----------gqedeiGLDISCNLGSLNILN-VMKNKs----------LEQTVKLATDSLTH 438 Bacillus liche...
AAM00816      382 LCCEVTQLQEVsdifpyl---------qshndtiGNDVVCTLGSLNLVN-VVEKGl----------LKESVDSGIRSLSK 441 Staphylococcus...
AAU05233      478 LCVEITQPTRPfhhitelyktk-eqldqmkpediGEVSLCNLGGVVLG--RMESLa---------eWEKTCYILLKFVDT 545 Enterobacteria...
AAQ14827      424 LCMEIVLPVYGfeketdly-------rddavkedGEVALCFLASLVAG--RIS-Ed---------eYADVAYYALAMVDS 484 Salmonella pha...
BAD49443      529 LCTEIAQNMAAietvsteirteegdtvvvktvrpgDFVVCNLASLSLGHLPLEDEe---------qIKEKVSTVVRALDN 599 Bacteroides fr...
P74240        461 LCCESFSNvt----------------------pgQDAHCCNLVSLNLANLDLQD------------IAGVSQIAVRMLDN 506 Synechocystis ...
AAS13943      272 LCSEITLTTGYdhl------------------nksRTAVCCLSSVNLEYYEEWKDn-------kLFIEDIMRFLDNVLED 326 Wolbachia endo...
P26685        475 IIDNGYYPTEATRRS-NMRHRPIGIGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKG-SHPSFP 552 African swine ...
AAT89523      561 LIDITVSSVPEADFS-NQQNRAIGLGVMGFTDVVERLGFSYESEEAYALIDEIMEHVSYAAIDESADLAQERG-AYPNFE 638 Leifsonia xyli...
CAD46099      439 VSRTSDLDSAPSIKKgNAANHAVGLGAMNLHGFLATNHIYYDSQEAIDFTDCFFYAMAYYAFKASNHLAKEKG-TFEGFS 517 Streptococcus ...
novoz:BL01192 439 VSETTNITNAPAVKKaNKAMKSIGLGAMNLHGFLAQNNIAYESEEARDFANTFFMMMNFYSIERSAEIAKEKGeTYHGYE 518 Bacillus liche...
AAM00816      442 VTDLMNVPFLPSVQKaNDELRAIGLGAMNWHGLLAKNMLSYGSRESLDIANSLFSAIRYYSIKSSMELAKETGkVFKGFK 521 Staphylococcus...
AAU05233      546 IIEIQDYP-FPTMEYtAKKRRNVGIGLMNAAGAMAAEGLAYEGIEARNWIHREAEKLSYFLHKASVRLAKEQG-ACEWFN 623 Enterobacteria...
AAQ14827      485 VIDLMDYP-YPSMRNhVQKRRSVGIGLTNVAHYLAKNYVNYSSRAGKTKLHELAEMHSYYLHEASLRLAKERG-VPEYMK 562 Salmonella pha...
BAD49443      600 VIDLNFYP-LPFAQItNQRYRSIGLGVSGYHHALAIRNIRWESEEHLRFVDRVFEQINYAAIEASADLAKEKG-RYEYFE 677 Bacteroides fr...
P74240        507 TIELTAPP-FADAKShNNKYRTIGVGAMGLADWLAKRRLNYD---ELADINRLFEEIGYWCTQSSMELAKERG-AYPAFP 581 Synechocystis ...
AAS13943      327 FINKAPNEMQRAKYS-AARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSKKLAEEKG------- 398 Wolbachia endo...
P26685        553 GSAASKGLLQPDLWVrcgdlipsw-enrvaqttQgvltpKKWWQLRLAAIQG--VRNGYLTALMPTATSSNSTG-KNECF 628 African swine ...
AAT89523      639 GSRWSQGLVPYDSIAlaeadrgi--pitvdrtiR-----LDWDRLREKVKGg--MRNATLMAIAPTASIGLVAG-TTPGF 708 Leifsonia xyli...
CAD46099      518 ESSYADGSYFYQYTEqnfepktqrvknllaeygLtlpsqEDWRKLVQSIKEIg-LANAHLLAVAPTGSISYLSS-CTPSL 595 Streptococcus ...
novoz:BL01192 519 GSAYATGEYFEKYVTqdfspkfe--kvaklfegMhiptkEDWKQLKQFVKEHg-LYHSYRLCIAPTGSISYVQS-STASV 594 Bacillus liche...
AAM00816      522 ESEYYTGEVFSSYIQksheprtk--kakkvlekVyipteEDWNSLSKDVKEYg-MYNGYLNNLAPTQSISYVQN-ATSSI 597 Staphylococcus...
AAU05233      624 RTKPSKGILVIDTYKktvdel------------vsvgleMDWESLRADILKYg-MRNSVLTAQMPGESSSVLLG-VTNSI 689 Enterobacteria...
AAQ14827      563 FTKYPEGWVPPKTANkkidek------------hdaklrYDWDDLAQRIKENggIRNSVLEAYMPNESSSLATN-TTNGL 629 Salmonella pha...
BAD49443      678 GSDWQTGAYFGKRgy----------------------tsPEWNRLAAKVAENg-MRNAYLLAIAPTSSTSIIAG-TTAGT 733 Bacteroides fr...
P74240        582 GSDWQKGLLIGSKPVsw--------------fqAnaakpERWEKLSNDIQTHg-IRNSHITAIAPNTSSSLVQG-CTASI 645 Synechocystis ...
AAS13943      399 -------------------------------------------ACSDAKEVDlmERFTHKLAIAPTASISIIAGnTSPGI 435 Wolbachia endo...
P26685        629 EPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAA 708 African swine ...
AAT89523      709 DPQFSQIFSRSTSSGKFLEVNRNLVEALQERGLWEETRESILR-SQGDIQGIAAIPDEIKAAFKTSFQLSPHAFIEVAAR 787 Leifsonia xyli...
CAD46099      596 QPVVSPVEVRKEGALG----------------------------RVYVPAYKIDADNYVYYKKG-AYEVGPEAIINIAAA 646 Streptococcus ...
novoz:BL01192 595 MPIMERIEERTYGNS-----------------------------KTYYPMPGLAPSNWFYYKE--AYDMDMFRVVDMIST 643 Bacillus liche...
AAM00816      598 MPVPSPIENRRYGNM-----------------------------DTYIPMPFMSPITQFFYESETAYKLDNKRIINTSAV 648 Staphylococcus...
AAU05233      690 EPPRKIVSIKGSAVN-----------------------------KVIAIAPGATDWETLMS-YKLAYDVDRIEWIKWVAT 739 Enterobacteria...
AAQ14827      630 YPIRDFILTKKSATG-----------------------------NVLFIVP---DYEELKYVYEIAWDIDTFDMIDCYAI 677 Salmonella pha...
BAD49443      734 DPVMKRFFLEEKKGA-------------------------------MLPRVAPALSDKTFWLYKDAYTLDQKWSIRAAGT 782 Bacteroides fr...
P74240        646 LPVYSRFFYDKWAKG-------------------------------TVP-IAPPFIGNCFWFYPENKTMDQRKVVKAVAA 693 Synechocystis ...
AAS13943      436 EPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASD 515 Wolbachia endo...
P26685        709 RNPFVSQSMSLNYYFYE-------------PELSQVLTVLVLGWKKGLTTgSYYCHFS 753 African swine fever virus Malawi LIL...
AAT89523      788 AQKWIDQAISRNMYLET-------------RDIGDMMDIYAAAWEKGVKT-TYYLHMK 831 Leifsonia xyli subsp. xyli str. CTCB07
CAD46099      647 AQKHIDQAISLTLFMTDq------------ATTRDLNKAYIQAFKQKCAS-IYYVRVR 691 Streptococcus agalactiae NEM316
novoz:BL01192 644 IQQHVDQGISFTLFLKDt------------MTTRDLNRIDLYAHHKGIKT-LYYARTK 688 Bacillus licheniformis DSM 13 = ATCC...
AAM00816      649 IQKHVDQAISTILYVESe------------IPTNKLVSLYYYAWEKGLKS-LYYTRSQ 693 Staphylococcus phage Twort
AAU05233      740 MQKFFSQSISTNMYYDYtkfe------neiIPGPVVVRDFMTAVKYGWKT-WYYANFN 790 Enterobacteria phage T5
AAQ14827      678 VQKFTGQAISSDFYVDYaks--------kkVSLAQALKYMIYANSVGMKT-MYYLNSR 726 Salmonella phage FelixO1
BAD49443      783 RQLHIDQSQSLNLYITNe------------FTMRQVLDLYLLAWECGVKT-VYYVRSK 827 Bacteroides fragilis YCH46
P74240        694 IQQWTDTGISMELLFNLnagiyfpeepersLNAKDIFDTLVMAWEAGCKA-IYYIRTV 750 Synechocystis sp. PCC 6803 substr. K...
AAS13943      516 RTSYICQSQSVNLFLPAn------------VHKRYLHKIHMLAWKKGLKS-LYYCRSQ 560 Wolbachia endosymbiont of Drosophila...
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