2JE6,2WNR,2PNZ,2BA0


Conserved Protein Domain Family
Rrp42

?
COG2123: Rrp42 
Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Intracellular trafficking, secretion, and vesicular transport]
Statistics
?
PSSM-Id: 441726
Aligned: 73 rows
Threshold Bit Score: 328.685
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2JE6_A         8 SNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLI 87 
WP_011177194   4 DTLAVISGLKRDMILNSIKRGKRLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGVKIEEGEPFPDTPDQGVMA 83 
WP_009887052   4 DSSAVLSEIRKGFILESIKTGKRLDGRGLQDYREIKITENFVPKAAGSAMVEIGKTKVVAGIKVEEGDPFEDSPDSGVMA 83 
WP_010901699   4 ESAEILSEIRKNYILSTMKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLT 83 
WP_015491852   1 MSTPIVSQIRRDHLLNLLAEGRREDGRQLDEFRSIKVETGLIESADGSARVELGDTVVMAGVKIVPGVPYPDAPGDGTLT 80 
WP_020448382   1 -MSEGIAEIKREYINKLLQVGRRVDGREANEYREIQIETNCIESAQGSARVKLGKTEVLAGIKMDVGTPFPDTPDRGVLT 79 
WP_048112859   4 MSEYIISEIKRDHIMNLLKEGKREDGRGVDDIREVQISVGCIESADGSARVKVGKTEVIAGVKIIPGTPFGDTPDSGVLT 83 
WP_088819566   1 --MDAMSKMKSNYVKKLSEEGKREDSRDAFSFREIKITKGIIEHAEGSAQVDIGDTRVIAGVKMVVESPHDDTPNEGNLI 78 
WP_077075896   4 DASGILSEIKKGYISKKLKEGTRADQRKLDEFRTMRIEPNFIPRAQGSAFVNLGKTKVLVGVKVESGEPFPDTPNQGVLT 83 
WP_022532971   1 MSNYVISQIKRDHLMNLLADGRREDGRQLDEMRKITVETGIIESAEGSARVHLGNTDVIAGVKVIPGTPYMDAPGDGVLT 80 
2JE6_A        88 VNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAAL 167
WP_011177194  84 LNIEMLPMAFPTFEAGPPGEEAIEYSRVVDRGIRESKMIDVTRLVIEPGTKVWMVFIDIDIINYAGNIIDASTIAAVAAL 163
WP_009887052  84 LNIELLPMAFPTFESGPPSEQAIEYSRVVDRGIRESKMVDTSKLVIESGKRVWMIFVDIDVLNYDGNIIDAATLAAVTAL 163
WP_010901699  84 TNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAAL 163
WP_015491852  81 TGMELLPMAHPMFEPGPPDENAIEMARVVDRGIRESGMIDVKKLCIKEGESIWMVFLDLYAINHDGNLFDAATIASVCAL 160
WP_020448382  80 TNTELIPMASPDFEAGPPDAGAIELARVVDRGIRESEMIDLQKLCIAEGEEVWINFLDIYVLDYDGNLFDACFLAAAAAL 159
WP_048112859  84 MGAELIPMAHPMFESGPPGEDAIELARVVDRGIRESGMVDVKALCITAGEEVWMCFVDIYALDYDGNLFDAANLATVSAL 163
WP_088819566  79 VSVTILPMAATEYESGPPSPEEIELSRVTDRGIRSAVSIDPASLFIEEG-KVWSVYVDVYVLNYSGNMLDAASIAAMAAL 157
WP_077075896  84 TNVEMLPMAFPTFEPGPPNEESIEIARVVDRGIRESKMIDLEKLCVEPGKKVMIVFVDIDVLDYDGNLIDACTMGVVTAL 163
WP_022532971  81 TGAELIPLAHESFEPGPPSEDAIELARVVDRGIRESGMIDVKQLCIKKGEEIWMVFIDIYALDYDGNLFDASNLAAVCAL 160
2JE6_A       168 YNTKVYKVEQHSNG----ISVNKNEVVgKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKS 243
WP_011177194 164 RNAIVPASRIG------------GEDF-KLPVNANPVSVTMAKIGDELVIDPDLEEEQVSNGRITITMAEDDHIHAIQKG 230
WP_009887052 164 KNTVVPASKIG------------QKDY-SLPINATPVSITMVKIGDEIVCDPDLEEEQVSNGRITVTIAEDHNIHAMQKG 230
WP_010901699 164 RNAVVPASKEG------------GEDF-KLPVSSTPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQKG 230
WP_015491852 161 RTATIPWKQYFPDM--------EKDDE-PLPVTCLPISVTEHKIGNDLIVDPNFDEEAIATARLTVTTDENGNYRAMQKG 231
WP_020448382 160 STTIVPAAERE-----------KGEDY-PLPIKHLPIQTTAVKIENSILFDPTLDEEKVADARLTVTTDENGDIRAMQKG 227
WP_048112859 164 RTAVIPGEQYG-----------KGENR-PLPVTCTPVSITSVKIGNDLILDPNFDEEMISSARLTVTTDDDGNFRAMQKG 231
WP_088819566 158 TNARVPEYKDGSANy-------EKRDK-KLSIKNVVTSTTFAKIGDSLFLDANENEESAMNARLTIQVD-DTQIRAMQKG 228
WP_077075896 164 HTATYRVDE-------------ASPET-KLPVRSMPVSVTMAKIDDELVCDPDVEEEQMSDARLTVTFTEDGHIRAMQKG 229
WP_022532971 161 KNAIVPWKQYGKSRtdddGNVTEMDNV-PMPVTCLPISVTECKIGNDLIVDPNFDEEAISTARLTVTTDNDGNFRAMQKG 239
2JE6_A       244 GKGSMSLQDIDQAENTARSTAVKLLEELK 272
WP_011177194 231 DVGEFTMEDIRKAIKASRDTGNRIRSQYF 259
WP_009887052 231 DIGEFSLDEIRKAIKTSSDIGNRLRESYL 259
WP_010901699 231 EIGAFTVEDVKKAVKMSLEVGKKLREKYF 259
WP_015491852 232 GRGSITRGDLSLCLDRAVEIGNKIRSIIG 260
WP_020448382 228 LSGAFTLEEVKQVIDSSLCISKELRKLIG 256
WP_048112859 232 GKGSITRKELSLCLDRAVEKGKVLRKIIG 260
WP_088819566 229 LSGSFTMEEINKLIDISFDKHKELKGLII 257
WP_077075896 230 NSGSFSMDQIKKGIDMSEVVGNKIREYIK 258
WP_022532971 240 GKGSITRGDLSLCLDRAVEIGKQIRNIIG 268
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap