1R1N,1D9Y,3OD7,1MRP,1XVX,1XVY,4ELO,1QVS


Conserved Protein Domain Family
PBP2_Fbp

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cd13543: PBP2_Fbp 
Click on image for an interactive view with Cn3D
Substrate binding domain of ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily.
The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. This periplasmic protein (Fbp) has high affinities for ferric iron and serves as the primary receptor for transport. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270261
Aligned: 23 rows
Threshold Bit Score: 355.073
Created: 27-Mar-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1R1N; tri-nuclear oxo-iron clusters in the ferric binding protein from Neisseria gonorrhoeae, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1R1N_A      1 DITVYNGq-hKEAAQAVADAFTra-tgIKVKLNSAkGDQLAGQIKeeg--srsPADVFYSEqiPALATLSAanlleplpa 76  Neisseria gonorrhoeae
NP_485425  32 TLTVYSGr-dEEIMRPLIERAKkd-lgLNIEVRYGdSTELAIALIeeg--knsRADVFYAQdaGSLGAIGRegkavklps 107 Nostoc sp. PCC 7120
ACY19067   49 TLTVYSGr-sEKLVAPALQAFEql-sgVDLEIKYGdTAELAAALLdeg--ensPADVFIAQdaSSLAFLASkdlfaplpd 124 Haliangium ochrace...
ADR37087   23 PLVVYSGr-sKSLVEPAIERFQqa-tgLRVRVKYGkTAPLALLLLeeg--drsPADLFLAQdaGALSLLAEagrfaplpe 98  Oceanithermus prof...
ADQ15491   31 EITIYSGr-sENLIGPVFEMFTee-tgIEINVNYGgTAELAATILeeg--qnsPADIFFAQdaGALGALADndrlvelpe 106 Halanaerobium sp. ...
ADP70658   25 ELTVYSGr-gESFAGPIFKIFEeq-tgIKIKARYGsTAELSALLKeeg--aksPADVFLAQdaGALIENRPlfadapkal 100 Rhodomicrobium van...
4ELO_A     23 TLTIYSGr-gQSLVEPLVKQFEae-tgIRVQVRYStDAQILAALQeeg--srsPADLFWANtaGALGQASAkgllrplge 98  Thermus thermophil...
NP_279875  73 ELSIYLGggeGGRYVALIDLINqyyddFSATQQTQrSSQLANNIVteyendtmQADVFWSIdaGSLAYVASngatrtlss 152 Halobacterium sp. ...
YP_446499  27 ELVIYSGr-sKALVDSLVQQYRqq-adVPVRVRYGtDSQLLAALQeeg--dqsPADVFWANttGALGNAVNnglltelpd 102 Salinibacter ruber...
EGM32477   42 ELTAYLGrgeGGLYDDIVAAIRkrnpdLDLKIRRApSAALANTLIaeakagvrRADLFWSIdaSSLGAVAKqgqstpipa 121 Salinisphaera shab...
Feature 1                                                                        ##           
1R1N_A     77 stinetrgkgvpvaakkDWVALSGRSRVVVYDTRklsekd----leksvlNYATPKWKNRIGYVPTSGAFLEQIVAIVKL 152 Neisseria gonorrhoeae
NP_485425 108 qll--nkvdsrfrspagEWVGISGRARVIDYNTKlvkane----lpksvmQLSDRKWRGKVGWAPTNGSFLSFVTAMRLM 181 Nostoc sp. PCC 7120
ACY19067  125 dig--grvaetfraddaSWVGLTGRARVLAYNTDklkped----lpksaaELGDPVWKGRVGWAPENASFQSAVAAMVQL 198 Haliangium ochrace...
ADR37087   99 all--ervparfrdpdgRWIGVTGRARTLAYAPEraaage----lpgsvfDLTAPRFQGRVGIAPTNASFQTFVTAMRAV 172 Oceanithermus prof...
ADQ15491  107 eyl--nkvdsrlrsqegLWLGTSGRARVVAYNTDyvdeae----lpdtiwGFLDEEWQGRIGWAPTNGSFQAFVTALRVL 180 Halanaerobium sp. ...
ADP70658  101 se----tvlpqfrsndsKWLATSGRARTLAYSKErvkgdq----lpksafDLTKPEWKGKVGYSPKNASFQAFLTALRVQ 172 Rhodomicrobium van...
4ELO_A     99 tll---ekpiafvpasrTWVPVTVRLRVLAYNPDrikaeelpeslldlprFAREKGLVGRVGWTPTYSSFQDMVAGMIAL 175 Thermus thermophil...
NP_279875 153 gtr---dpvlseqftteHWVGLAGRSRAVPYNTNqfsesdi---pnsvdaFTTADRFQGTLGWAPTYGAFQGFVTAMRQL 226 Halobacterium sp. ...
YP_446499 103 tla---nraarftpsnqRWTPVTTRFRVLAYNSDavspedl---pdsvldLPEHEEFEGRVGWTPAYSSFQDFVTALRVT 176 Salinibacter ruber...
EGM32477  122 ai----qqhikpnfryeQWAAISGRLRTVPYNPErvtpa------qlpkhIMGFADTDLKIGWAPAYGAFQSFVTAMRLL 191 Salinisphaera shab...
Feature 1                            ###                # ##                                  
1R1N_A    153 kGEAAALKWLKGLKEy-GKPYA-KNSVALQAVENGeIDAALINNYYWHAFARekgv------------------------ 206 Neisseria gonorrhoeae
NP_485425 182 eGDQKTLAWLKAMKAngAKAYP-KNSAIVEALGRGeIALGLVNNYYLYRFTKkdp------------------------- 235 Nostoc sp. PCC 7120
ACY19067  199 eGAEATQTWLEAVKAnePRDYP-KNTPAVMAVARGeVDVALVNHYYLYRLRAeqg------------------------- 252 Haliangium ochrace...
ADR37087  173 hGDARTLAWLRDLKAngARAYA-KNTALLEGIAAGeIDFALPNHYYLLRIRAtrp------------------------- 226 Oceanithermus prof...
ADQ15491  181 eGEERAEEWLRGIVAnqPREYR-NNTTTVDAVGRGeVHIGFANHYYLFRFIAeqg------------------------- 234 Halanaerobium sp. ...
ADP70658  173 eGEEKAKAFVKGLVDngAKTYA-NNVAIVQAIADGeIDAGLVNSYYLTRFVArda------------------------- 226 Rhodomicrobium van...
4ELO_A    176 yGEEKTREWLLAMKAlaPKAYP-SNPAMLDAIRAGeVDLGSTNHYYVVRFRRag-------------------------- 228 Thermus thermophil...
NP_279875 227 rGDEATREWLTSMRDqaPTRYRnEYQAVSEGITNGeVGAGLTNHYYPMLVFAdrp------------------------- 281 Halobacterium sp. ...
YP_446499 177 eGAETARTWLSDMQAlnPNSYT-SNTPMVQALEAGeIDVALTNHYYVLRLKHggaegeyegaegeyegeeeegeeheeea 255 Salinibacter ruber...
EGM32477  192 eGEERTREWLSGVKRq-AKSYA-GELGVVMAVARGeVDVGFANHYYTLRLKKgqp------------------------- 244 Salinisphaera shab...
Feature 1                                                                                     
1R1N_A    207 ---qnvHTRLNFvrhrdpgalVTYSGAAVLKssqnkDEAKKFVAFLAGKEGQRALTAVrAEYPlnphvvstfnlepi--- 280 Neisseria gonorrhoeae
NP_485425 236 ----kfPVAIHHtkgd-agslINVAGLAVLKttdqqSDAEKFVAYMLKPETQKFITENfYEYPlvtgipvaqkqlpl--- 307 Nostoc sp. PCC 7120
ACY19067  253 ---ddfPVENHYfkdgsahamVNLSGAAILKtsakqDLAAKLLAYLLSDAGQAFFVADnHEFPaakgvsspaalpai--- 326 Haliangium ochrace...
ADR37087  227 ----efPVAQAFfapgdvgnlVNVSGAAVLVhsrrkAEALRFLAFLLEEETQRYFAREvFEYPlvtgvappaglpsle-e 301 Oceanithermus prof...
ADQ15491  235 ---edfPVRHLYtend-agamINIAGIGVLDvardnEAINSFLEFILREDVQEYFIKAnSEYPviedlsiddplivp--l 308 Halanaerobium sp. ...
ADP70658  227 ----kvPVAQTFfekgdignlLFVSGAGIVEtsknkADAAKLLDFFLSPAVQQHFASAiGEYPvikgvipnptltgplat 302 Rhodomicrobium van...
4ELO_A    229 -----yRLGMHHfrdgdagnlALVTGAGLLKtsknlAAATRFLTYLLSPQAQQYFVGNiGEYPlvkgvaldpnllpl--e 301 Thermus thermophil...
NP_279875 282 ----daPLDLAFtqnd-asslVNTAGASVLKgaddpELAELYIRHLLSAEAQEFLATRgFAFPmidgvdpvgplpsi--- 353 Halobacterium sp. ...
YP_446499 256 tprasaPVEMYHfadgdlgnlALVTGAGALQtsnqpDAANRFLRFLLSEQAQSFAATRvNEYPvvsgasvpdylmpad-e 334 Salinibacter ruber...
EGM32477  245 ----naNVELALtegd-agslVNSSGVLLLNd---sALARNFLRYLLSREVQSFLASQaYEIPmaadvalpeglpg---- 312 Salinisphaera shab...
Feature 1                                 
1R1N_A    281 akleapqvsattvSEKEHATRLLEQAGM 308 Neisseria gonorrhoeae
NP_485425 308 kqlqppkldlgklSDLKGTMSLIQEAGL 335 Nostoc sp. PCC 7120
ACY19067  327 dsigaptidlaqlRELEQTHELLRASGV 354 Haliangium ochraceum DSM 14365
ADR37087  302 llrlapnvslgqlSDLKGTIRLLREAGW 329 Oceanithermus profundus DSM 14977
ADQ15491  309 eeinapdidlsnlEDLEGTLDLLFDVGV 336 Halanaerobium sp. 'sapolanicus'
ADP70658  303 ptdyapkvpleklGDVSATKKLLTELGL 330 Rhodomicrobium vannielii ATCC 17100
4ELO_A    302 ealakspkldlekLPLDRALRLLRETGV 329 Thermus thermophilus HB8
NP_279875 354 aelsppeidlqslSDVQPTVKLLKDVGI 381 Halobacterium sp. NRC-1
YP_446499 335 alkmspefdlqklQNMEPTLDLLRDAGA 362 Salinibacter ruber DSM 13855
EGM32477  313 -kihppevdltrlSDLQPTLELLRETRV 339 Salinisphaera shabanensis E1L3A

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