1GM5


Conserved Protein Domain Family
RecG_wedge_OBF

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cd04488: RecG_wedge_OBF 
Click on image for an interactive view with Cn3D
RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched chain substrates.
Statistics
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PSSM-Id: 239934
Aligned: 202 rows
Threshold Bit Score: 46.0336
Created: 7-Jul-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ssDNA bindinggeneric binding
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:ssDNA binding site
Evidence:
  • Structure:1GM5_A: Thermotoga maritime RecG binds a three-way DNA junction (a stalled replication fork mimic); defined at 3.5A contacts.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                 #                 #      #                         
1GM5_A       169 TTQGKIVSVETKKfq-----------nmNILTAVLSDg-lVHVPLKWFn---qDYLQTYLkqltgKEVFVTGTVKSnayt 233  Thermotoga mar...
YP_482688     67 TVQARVEKTERRPmrg---------trkSMVRVTVTDg-rHSLSLTFFn---qSWRERDLrp--gTTALFAGKVDEfrg- 130  Frankia sp. CcI3
ABG98289      59 TIIARVTSAAVVKmkn---------rpgSMLKVVLSTd-tQNVDVTFFs---pQKVKHVIkp--gVRAMFSGTVKYfrq- 122  Rhodococcus sp...
BAD59043      59 TVIGRIAKTELRPmrn---------rrgSLLKVQLDTgsgRPVDVTFFn---gDKVKYVVkq--gLRAMMSGNVSYwrpg 124  Nocardia farci...
CAD66872      44 TIVGRVLSTEQRKtfs----------gaNFLSVTLSDg-eNIIQLVFFh---qPWRAENLkp--gACGLFSGKVTEfnn- 106  Tropheryma whi...
ZP_01428655   63 TVLAQVQRTAVRPmrq---------rrgNLLEVTVGDgsgGALTLTFFgn--qVWRERDLrp--gRWGLFAGKVTEfrs- 128  Salinispora tr...
AAK47377      61 TIVDVITDTYSFPmkkk--------pnrKCLRITVGGg-rNKVTATFFn---aDYIMRDLtk--hTKVMLSGEVGYykg- 125  Mycobacterium ...
NP_823847     62 TVVAQVADARLHTfasaka----prgkgQRLEVTITDg-sGRLQLVFFgngvhKPHKDLLp---gTRAMFSGKVSVfnr- 132  Streptomyces a...
ZP_00572431   64 TVQARVTKVVRHQgrpgsgggprrrgggGRTEITVTDg-rGELSLVFFn---qQWRAKELvp--gTTALFAGKVAEfrg- 136  Frankia sp. EA...
ZP_01190781   62 TFVDVIARAELKRvrnq--------psrEFLVVTLRDr-rPKVTATFFn---pKWLKKTLve--gTKVMLSGEVGYfrg- 126  Mycobacterium ...
Feature 1           #        
1GM5_A       234 gqYEIHNAEVTP 245  Thermotoga maritima
YP_482688    131 qrQLTNPEVQLL 142  Frankia sp. CcI3
ABG98289     123 kwSLTHPSYLIL 134  Rhodococcus sp. RHA1
BAD59043     125 swSLSHPGYLIL 136  Nocardia farcinica IFM 10152
CAD66872     107 kkQLSHPEYELF 118  Tropheryma whipplei TW08/27
ZP_01428655  129 rrQLNGPEYVLL 140  Salinispora tropica CNB-440
AAK47377     126 amQLTHPAFLIL 137  Mycobacterium tuberculosis CDC1551
NP_823847    133 rlQLAHPAYELL 144  Streptomyces avermitilis MA-4680
ZP_00572431  137 rrQLIHPEVHLL 148  Frankia sp. EAN1pec
ZP_01190781  127 tmQLTHPAFMVL 138  Mycobacterium flavescens PYR-GCK

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