Conserved Protein Domain Family
GramPos_pilinD1

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pfam16555: GramPos_pilinD1 
Gram-positive pilin subunit D1, N-terminal domain
GramPos_pilinD1 is the first subunit domain of Gram-positive pilins from Strep.pneumoniae. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three Ig-like, CnaB, domains along with a crucial N-terminal domain, D1. The three IG-like domains are stabilized by internal Lys-Asn isopeptide bonds, but this N-terminal domain makes few contact with the rest of the molecule due to the different orientation of its G beta-strand. Strand G of D1 also carries the YPKN motif that provides the essential Lys residue for the sortase-mediated intermolecular linkages along the pilus shaft. Gram-positive pili are formed from a single chain of covalently linked subunit proteins (pilins), usually comprising an adhesin at the distal tip, a major pilin that forms the polymer shaft and a minor pilin that mediates cell wall anchoring at the base.
Statistics
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PSSM-Id: 465172
Aligned: 40 rows
Threshold Bit Score: 87.8558
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012290215   29 ETTKTVTLHKILMD-KTTFGK-------FTeg--ttGKDGTEYdgnkitnvKDFFAgkeakeGSAKEIAGVFFAWQVKGK 98  Finegoldia magna
Q8E0S9         45 PAKTTVNIYKLQAD---SYKSeitsnggIE------NKDGEVIs------nYAKLG------DNVKGLQGVQFKRYKV-- 101 Streptococcus ...
bgi:05SSU2101  33 TASTTVIVHKIVMN-NDDFNK-------FTyeenlsKYNGNSIgd-----lKNYFG------NSAVEVAGVKFDVWK--- 90 
EGY80248       33 SGKTKVVVHKMHQErLEDVSEka----kQK------GYNGGEIkpq---dyTEIFG------DKSKELENVKFIVYKVTD 93 
WP_023055265  103 TGTTDLGNNKTGKA-EDVFPG-------YK------GLDGTEFrgqe-ldiVKYFG------SDSKPIDGVAFRIYEEYK 161 Peptoniphilus ...
EHR36284       36 RKTNKVVLHKLLMS-ESELSDwdpesitEE------KYDGTQTiq----elANNTG------KDLKEIAGVYFAFQTEAG 98 
Q8DYR6         32 ATTNTVTLHKILQT-ESNLNK-------SNfpg-ttGLNGKDYkggaisdlAGYFG------EGSKEIEGAFFALALKED 96  Streptococcus ...
EFR32596       32 GETETLTVHKILMTkEGLKNHdv----nKK------GYDGNKIen-----iKTFFE------SSAKEIDGVYFKLQKLKT 90 
EEU12161       32 EKTETVTVHKILMD-KTSFNA-------FDvg--ttGKDGTKYdgnkianvKDFFVakentkGTATEIEGAYFVVKNADG 101
BAH17072       31 GKVTDLTIHKITGSeETTATY-------DQ------LVNG-----------TAPAG--------SKPISNISFTYWKVTS 78 
WP_012290215   99 EF-VYKtnsegilvdKNNQVIEANIKDYDKLTTDELKAkavvdheqyikgklvdgvmtpdldsndAIQFTN--DLKEAFG 175 Finegoldia magna
Q8E0S9        102 ---------------KTDISVDELKKLTTVEAADAKVGtilee------------------gvslPQKTNA--QGLVVDA 146 Streptococcus ...
bgi:05SSU2101  91 ---------------KTDVVAPEAKTGAELGITGDTNKyv------------------------kTDKTAMtqDNGATFT 131
EGY80248       94 SDlLKEla------dSTNKTKYDTEEKIKASDKKDKFTqe------------------------qTQTTGR--GNAGATF 141
WP_023055265  162 GApTSGa--------PAGYTKGSELKQTAKLAENDLDNdtyykli--------------qvggkdYVTTAN--GGIAEAT 217 Peptoniphilus ...
EHR36284       99 KWiD-----------AEGKEVDSVDKAL---------------------------------------------GGLTTAT 122
Q8DYR6         97 KSg------------KVQYVKAKEGNKLTPALINKDGTpe------------------------iTVNIDEavSGLTPEG 140 Streptococcus ...
EFR32596       91 NVek----------dKVDVNNDDQWEDVAGQ----------------------------------AGLTGS--QKDKTNN 124
EEU12161      102 TKfIK----------EDGTETDKEEEALK------------------------------------GKTTKD--GLVLNTS 133
BAH17072       79 EQlKQL---------KANPQNYDTLEKVRTLLSEPTGT---------------------------TPKTAA--DGTTKVP 120
WP_012290215  176 AKTGdegvkfNTDKLKGTFLIQEIHEKstyvd-kdgkTLTDTKAVPVEITLPLVNEKG-----TVQDAHVYPKNT 244 Finegoldia magna
Q8E0S9        147 -LDS---------KSNVRYLYVEDLKNsp-------sNITKAYAVPFVLELPVANSTGt---gFLSEINIYPKNV 201 Streptococcus agala...
bgi:05SSU2101 132 -LAN------------GIYIFTEDKENspyy--nnqnELTGMKAVPFKLELPQAKTDGsgyfdTKTPLHVYPKNT 191
EGY80248      142 TLDK------------GSYWFIEDQTTvrd----gnkVFAGAVAVPFLLELPVYKQNGek-fsETDALHVYPKNT 199
WP_023055265  218 -LPD------------GTYRIVEDKTNstykg-ekgeTLSGMKAVPFTLTLPVAKPDGtgnysETEPLNLYPKNT 278 Peptoniphilus sp. B...
EHR36284      123 GLTLd-----TSKLPEGKYQIVEVTEKstyvg-engeTLTGQKAVPVMITLPMYNSDG-----LVEVAQVYPKNT 186
Q8DYR6        141 DTGLv----fNTKGLKGEFKIVEVKSKstyn--nngsLLAASKAVPVNITLPLVNEDG-----VVADAHVYPKNT 204 Streptococcus agala...
EFR32596      125 KLEGyt---fNTKGLKGQFRIVEVHDKstykg-ekgeTLTDKKAVPSLVTLPLINDNG-----VVTNAHMYPKNT 190
EEU12161      134 NLKK------------GTYKIYEDQSKssyknadgqsILADAKAVPIEIALPLVNDNG-----VVKNAHVYPKNT 191
BAH17072      121 NLAE------------GYYWFIEDKST----------AIKDAKAVPFGLELPITNEAGt---gYINDLHVFPKNT 170
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