3FCN


Conserved Protein Domain Family
DUF29

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pfam01724: DUF29 
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Domain of unknown function DUF29
This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Swiss:Q2RPE2, PDB:3fcn, is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.
Statistics
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PSSM-Id: 426397
Aligned: 297 rows
Threshold Bit Score: 81.3232
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3FCN_A             9 YEADLFVWCQQQADGLRAlsrsrrDLPDDLDLEHIAEEIEDXGRSELREATSLVRQICVRVIX---AXSAPEaPDRARWR 85  Rhodospiril...
WP_015206304      11 YEQDYELWLESTINQLRQ------HDFDNLDIDLLIEEIEEMGGSLKDALENNLIVILAHLLK---WKYQPV-HRSGSWR 80  Cylindrospe...
jgi:Sta7437_0896  16 ieESYELCLDKQIELLRS------RNFSELNIEYLIEELEGLNKSNERELESYLIVLIAHLLK---WEYQPS-LQCGSWR 85 
WP_015189526       9 YDTDYGLWLASQIDSLKS------HQWDNLDIDNLIEELEGLNRSNKRELESYLVVILTHLLK---WEYQPN-SRSGSWN 78  Gloeocapsa ...
WP_015188409       9 YDTDYGLWLASQIDSLKS------HQWDNLDIDNLIEELEGLNRSNEHALESYLVVILTHLLK---WEYQPK-ARSRSWQ 78  Gloeocapsa ...
jgi:Cylst_4585    12 YEVDYLQWLETTVEKLRS------QEYSTVDWGNLIEEIEDMGRSEKRSLESNLIVIILHLLK---WHFQPD-NRSGSWE 81 
BAI89231           5 YCEDYVLWIEETLEQLRD------RNYDQVDWENLLEEIEDMSKRERSSLRSNLAMTLLHLLK---WEFQPE-LRTGSWA 74 
WP_006616389      12 YDRDYLQWLEVTIAQLRS------RHYNDVDWDNLIEEIEDMGRRERHSLENNLVVVLLHLLK---WEFQPK-WRTGSWE 81  Arthrospira
BAG02618           3 iQTDYVGWLNETITLLRQ------KNFDKVDWENLIEEIESLGRSQKRELRNRLTTILEHCLKlcyTDYV---EDYRGWQ 73 
jgi:PCC8801_0216   3 iQSDYALWLDQTIELLKE------KKFDKIDWENLIEELESLSRSERRELRNRLTTLLEHCLKlcySNYV---QDYRGWT 73 
3FCN_A            86 SEVVSWHNLLLDTI--TPGXidRIDI----GVIWRRAVSEAKAalieinvapQAGLSF-----QAPLP-AD-HFLDEDFD 152 Rhodospiril...
WP_015206304      81 ASIKEHRRRINKSIqkHPSL--SRYYesifEECYLPALDWAVE---------ETGLCPdifpqQCPFT-PQ-QVIDSEFL 147 Cylindrospe...
jgi:Sta7437_0896  86 GSIINSRNRIAKLLkqQPSL--KRKLpeiiPEAYIEAKEWASE---------ETGMKItlfplNCPYE-ES-KLLDKSWL 152
WP_015189526      79 GSIFNGRKRIARLLkeQPSL--KTYIpeilQAAYVDGVEIARR---------ETGLPSdtfptECPYS-IS-QILNLEFL 145 Gloeocapsa ...
WP_015188409      79 GSILNGRKRIARLFkqQPSL--KSRVsdlvPEAYTDAIEIATL---------ETGLPAdvfstECSYS-AD-QILDLDFL 145 Gloeocapsa ...
jgi:Cylst_4585    82 GSIIEHRRRVKKLLneSPSL--KPYLesifVESYTEAVKQSKA---------ETRLPLenfpiECPYT-LA-NVIDDEFL 148
BAI89231          75 GSITEHRTRILDILedSPSL--KNYLpeaiLWAYPRTRRQGKD---------ETGLPLevlpaECPYA-IA-DILNDDFL 141
WP_006616389      82 GSIIEHRRRIRRALksSPSW--QNYLasvvDECYASARKQARA---------ETQLPLevfpaACPYA-IA-DILKDDFL 148 Arthrospira
BAG02618          74 ETIRRSQRELEELLrdSPSL--KPYWeqvfLDCYATALKSLRD---------NPDYQSfnfpdDCPFPqEIsQILQKKVW 142
jgi:PCC8801_0216  74 ETIRRSQRELTELLqeSPSL--KSYWneifFNCYDQALKSLRE---------NSDYQCfpfpdSCPFPaQIsQILQKtdw 142
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