Conserved Protein Domain Family
zf-CCCH_2

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pfam14608: zf-CCCH_2 
RNA-binding, Nab2-type zinc finger
This is an unusual zinc-finger family, and is represented by fingers 5-7 of Nab2. Nab2 ZnF5-7 are zinc-fingers of the type C-x8-C-x5-C-x3-H. Nab2 ZnFs function in the generation of export-competent mRNPs. Mab2 is a conserved polyadenosine-RNA-binding Zn finger protein required for both mRNA export and polyadenylation regulation and becomes attached to the mRNP after splicing and during or immediately after polyadenylation. The three ZnFs, 5-7, have almost identical folds and, most unusually, associate with one another to form a single coherent structural unit. ZnF5-7 bind to eight consecutive adenines, and chemical shift perturbations identify residues on each finger that interact with RNA.
Statistics
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PSSM-Id: 464217
Aligned: 156 rows
Threshold Bit Score: 27.0904
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EGG09566     527 PCRFG--T-Q--CTraD--CHFTHP 544
OON09752     298 DCKHFnyG-EgtCPf-StsCLYRHA 320
CCO66058     447 PCKHYnnG-R--CPf-GtsCFYSHG 467
RCN45292      98 KCKNF--P-N--CP--GakCIYSHG 115
XP_002871822  56 DCIYFlrTgV--CGy-GsrCRFNHP 77 
VAI15269     384 ECQHFvkSgF--CKf-KakCKYHHP 405
XP_006404258 324 ECSYYlkTgD--CKf-KfkCKYHHP 345
XP_009046381  52 NCKYD--A-K--CS--RpdCPYTHA 69 
XP_024612207   5 ACKYFeqG-KgtCPf-GskCLYRHA 27  Yangtze finless porpoise
XP_011404533 103 PCKYFdeG-RgtCPf-SdsCLYRHA 125 Amphimedon queenslandica
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