Conserved Protein Domain Family
rSAM_fuse_unch

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TIGR03960: rSAM_fuse_unch 
radical SAM family uncharacterized protein
This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 188475
Aligned: 19 rows
Threshold Bit Score: 1109.27
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEP28374   8 EDILMQVDKPARYIGNELNSVMKDPSEVA-VSFVMCFPDVYEVGMSHQGIQILYDMYNREEGIYCERLYSPWPDLHKIMK 86  Shuttleworthia sate...
EEG37967   8 DEILLKIEKPVRYIGNEVNMVRKDPE-GK-IRFAMCFPDVYEIGMSHLGMKIIYDQMNRRDDVYCERVFSPWVDLDKVMR 85  [Eubacterium] halli...
EDS12505  12 ERVLLQVQKPARYTGGELGSVVKDAASVD-VRFAFCFPDLYEVGMSHLGMKILYSLMNARDDIWCERVFAPGDDFERVMR 90  Anaerotruncus colih...
EEG29942   8 ERILLQAQKPARYIGGEVNSIVKDAAQVD-VRFAFCFPDTYEVGMSHLGMKILYKVLNDLPNCWCERVFAPWLDFEEQMK 86  [Clostridium] methy...
EDO60765   6 EKVLLKVQKPGRYAGGESNRVVKDQEQVD-VRFAFCFPDVYEVGMSHLGMKILYGLFNEMDGVWCERVFAPWPDMEEQMR 84  [Clostridium] leptu...
EDS00384   7 DKILLKVQKPSRYIGGEVNAVVKDKSKVD-IRFAFCFPDTYDIGMSHLGIKILYSLKNSVPNYWCERVFMPLPDMEEQMR 85  [Eubacterium] sirae...
EDP19833  11 KEALGRVQKPGRYTGGEPGSIYKEKDKVD-VRFAFCFPDTYEVGMSFLGEKILYELLNSHENWWCERAFMPWLDMKAEME 89  Faecalibacterium pr...
EEG46497  10 KEALSLVQKPGRYTGGEPGCVYKDKAAVD-VRMAFCFPDTYEIGMSFLGEKILYDLLNRHENWWCERAFMPWTDMKEQME 88  Subdoligranulum var...
EDM99617   6 ERILPRVQKPARYTGGEYNAVVKDRRKVE-VRYALCFPDTYEIGMSNLGVRILYGVMNNLPWCWCERVFAPWGDMEEEMR 84  Pseudoflavonifracto...
EDQ96585   7 KKILKKVEKPARYLGNEINSIHKDTTNENlIRYAHCFPDLYEVGMSHLGSQILYRVINRDEDVFCERVYAPALDMEEIMR 86  Intestinibacter bar...
EEP28374  87 ERNIPLFTLETQTAVRDKDFLGITIQYEMCYTNILQILDLSQIPLLAKDRGEEDPIVVGGGPCTYNPEPIAPFFDMFFLG 166 Shuttleworthia sate...
EEG37967  86 EENIPLFALESQDPVFMFDFLAVTIQYEMCYTNILQILDLSQIGIYAKDRREDAPFVIGGGPCTYNPEPLADFFDMFYIG 165 [Eubacterium] halli...
EDS12505  91 EHQIPLFGLESLDAIADFDMIGFTLQYELSFTAILNMLDLAGLKVRSKDRPGFAPLVVAGGPCACNPEPIADFIDLFILG 170 Anaerotruncus colih...
EEG29942  87 QNEIPLYALESFDPLNAFDIVGFTLQYELSYTNILNMLDLGGIPVLAKDRKGLRNLVVARGPCACNPEPLADFVDLFMLG 166 [Clostridium] methy...
EDO60765  85 EHHIPLYGLESGDAITDFDFIGFTLQYELSYSNVLNMLDLAGIPLYAKDRKGLGRIVVAGGPCACNCEPLADFLDLVFLG 164 [Clostridium] leptu...
EDS00384  86 KNDIPLYGLESLDPIKDFEFIGFTLQYELCYTNILSMLDLAGVPVFAKDRKDLFPIVMGGGPCVCNAEPIADFFDLFVLG 165 [Eubacterium] sirae...
EDP19833  90 RLQLPLYTMESKDPLTAFDAVGFTLQYELSYTNILAMLDLAGIPFYAKDRDDRWPLIVAGGPCACNAEPIADFFDVIQLG 169 Faecalibacterium pr...
EEG46497  89 RLQIPLYCLESKDPLTDFDIVGFSLEYELCYTNILAMLRLAGIPLRAADRDEHWPLIIAGGPCVCNAEPMADFFDVMQLG 168 Subdoligranulum var...
EDM99617  85 AEGLPLYGLESGDSIADFDMIGFSLGYEMAYTNVLNMLDLAGLPVRAEERHELSPIIVAGGTCAYNPEPLAPFVDIFSLG 164 Pseudoflavonifracto...
EDQ96585  87 ENNIPLFALESRESIRNFDFVTFTLQYELSYSNILNMMDLAGIPLKREDRELDDPFIMVGGSCAYNCEPLADFIDIAVLG 166 Intestinibacter bar...
EEP28374 167 EGEVNNVDVVRLYERMKKEGvYSREDFLHEAAKFPGVYVPAFFTPVYQEDGRLEDWEIKYDDIPSRVRRQVMMDMDHATY 246 Shuttleworthia sate...
EEG37967 166 ESETVYYDLMDLYKEHKKNG-GNRKEFLRKASHIPGIYVPSLYETTYNEDGTIASFEPLYEDVPRTILKQVQMDLTNTFY 244 [Eubacterium] halli...
EDS12505 171 EGEEVNLELIDLYKTCKREG-ASKEAFLRRAAQIEGIYVPSLYDVAYRPDGTIAAVTP-RGDAPAVVHKRIIRDLDSVFY 248 Anaerotruncus colih...
EEG29942 167 EGEEVLVELIDLYAEAKKQD-LTKEAFLKRAAQIQGVYVPSLYDVSYNEDGTVQAITP-RDGAPEKVKKRIIHDMDSVPY 244 [Clostridium] methy...
EDO60765 165 EGEEVDREVIELYRDCKKTG-KTREEFLAAAAGIEGVYVPSLYQVDYHEDGTVKSISP-TQGAPARVKKRIVMDLDSLYY 242 [Clostridium] leptu...
EDS00384 166 EGEEVNLKMMQLAEKFKKNG-GTKQEYLEQAAQIEGIYVPSLYDISYNEDGTVKAITP-KNNAPAKVRKQIIDDFDKVYT 243 [Eubacterium] sirae...
EDP19833 170 EGENQLPAICAEIEKAKKEG-ISKKQLLLNIAKIPGVYIPAFYDVTYHEDGRVKAITPNEPGIPARITKAIIKDLNQFAP 248 Faecalibacterium pr...
EEG46497 169 EGEQMLQDICATVEQGKKQG-WSKENLLLELAKIPGVYIPSFYDVTYLPDGRIDKISPNRPGIPARITKAIVKNMDDYEP 247 Subdoligranulum var...
EDM99617 165 EGEDVSVELLELYRKAKSEG-WEKEEFLQAAAKIPGLYVPSLYDISYREDGTVAAITP-RDGAPEVVTKRIVQDFNKSYF 242 Pseudoflavonifracto...
EDQ96585 167 EGEELNLEVIAEYKEWKKNK-TTREDFLARVAKIEGVYVPSFYDVEYNEDQTVKSVKPNREGVNEKVRKRIIKNMDEVYY 245 Intestinibacter bar...
EEP28374 247 PVHPIVPFVRSVQDRVVIEIMRGCIRGCRFCQAGMVYRPTREKSLATLKSYVEEMLSSSGYDEISLSSLSSSDYRGLSDF 326 Shuttleworthia sate...
EEG37967 245 PEKQIVPYIKVTQDRCVLEIQRGCTRGCRFCQAGMIYRPLRERSLPMLEELAAKGIKGTGNDEISLSSLSSSDYSHLPEL 324 [Eubacterium] halli...
EDS12505 249 PETFVVPFTETVHDRAMVEVLRGCIRGCRFCQAGFIYRPFREKRHETLNKNARALCDSTGYDEVSLTSLSTSDYSEIEPL 328 Anaerotruncus colih...
EEG29942 245 PEGFIVPFIQTVHDRAMIELMRGCIRGCRFCQAGFLYRPLREKSAELLCSQGKALCENGGFEEISLSSLSTSDYSQLEPL 324 [Clostridium] methy...
EDO60765 243 PKAFVVPNIEIIHDRTVEEIFRGCIRGCRFCQAGFLYRPVREKSPETIDRQSRELCRNTGYDEISLSSLSSSDYTRITEL 322 [Clostridium] leptu...
EDS00384 244 PDSFVVPYTQIVHDRSVVEVLRGCIRGCRFCQAGFIYRPFREKSKETIVNQVKSLTETTGYDEVSLSSLSTSDYSDIEGL 323 [Eubacterium] sirae...
EDP19833 249 PTNFVVPMVGAIQDRASIEVLRGCVRGCRFCQAGFLYRPMRQRDASLLNKAAQDLCANTGYEELSLSSLSTSDHGQLEEL 328 Faecalibacterium pr...
EEG46497 248 PKNFVVPLVGAVQDRASVEVLRGCVRGCRFCQAGQIYRPFRERSPQLISDCARELCRNTGYDELSLTSLSTSDHSRLEDI 327 Subdoligranulum var...
EDM99617 243 PVKTIVPSTEITQDKVTLEVFRGCIRGCRFCQAGYAYRPVRSRDPELLVKYGIEACKDSGYQEMTLSSLSTSDYRHLLKL 322 Pseudoflavonifracto...
EDQ96585 246 PEKLIVPYIEIVHDRVVLELFRGCTRGCRFCQAGMIYRPIREKNLDTLTKSVRELVDNTGYDEISLSSLSTSDYTHLPEL 325 Intestinibacter bar...
EEP28374 327 LDYLIDKCDREKINISLPSLRIDAFSLDVMSKIQDVRKSSVTFAPEAGSQRMRDVINKGISLEEIMSGAKEAFHGGWNKL 406 Shuttleworthia sate...
EEG37967 325 CNYLIDNYRSKNINIALPSLRIDAFSLDVMSKVQDVRKSSLTFAPEAGTQRMRDVINKGLTEEVILHGAMEAFKGGWSKV 404 [Eubacterium] halli...
EDS12505 329 LNEMLTWTEPDAVNIALPSLRVDNFSRELMERVAAVRKSSLTFAPEAGTQRLRDVINKNVTEEEVLRTCKTAFSGGYTNV 408 Anaerotruncus colih...
EEG29942 325 LDTFMDYTQQHHINLSLPSLRIDNFSDELLEKIAKVRKSGLTFAPEAGTQRLRDVINKNVSEEEIMQTCRIAFEGGYSTV 404 [Clostridium] methy...
EDO60765 323 LEKMLTWTDREKVSVSLPSLRVDGFSNELMEKLNTVRRGGLTFAPEAGTQRLRDVINKNVTEEELLKTCSTAFCGGWTTV 402 [Clostridium] leptu...
EDS00384 324 LNDITEYTDKKGVNLSLPSLRIDKFSDEVVKKIKSVRRSGLTFAPEAGSQRLRDVINKNITEEAIFKSCKIAFEGGYSSV 403 [Eubacterium] sirae...
EDP19833 329 LDDLNEWAPKEHVSLSLPSLRVDNFSQSLIEKTTKVRKSGLTFAAEAGTQRLRNVINKNVTWDEIEKTCTIAFNAGYTSV 408 Faecalibacterium pr...
EEG46497 328 LDALNSWAEADHVSLSLPSLRVDNFSQSLVEKTTKVRKSGLTFAAEAGTQRLRDVINKNVTWDQIERGCRIAFSEGYTSV 407 Subdoligranulum var...
EDM99617 323 CDGLLEWCEPEKVSLALPSLRADNFSMNLMHRLQHGKKSGLTFAPEAGTQRLRDAINKNVTEEDLLQSCRTAFSGGWSSV 402 Pseudoflavonifracto...
EDQ96585 326 TDFLVDEFTPENIGISLPSLRLDNFSMEIAEKIQQVRKSGLTFAPEAGTQRLRDVINKGVTEDDLKNTTKKAFEMGWNSV 405 Intestinibacter bar...
EEP28374 407 KLYFMLGLPTETDEDIMAIPRLGNDLAALYFEeIPKDQRNGRAQITMSTSFFVPKPFTPFQWAPMHPPEDYIRRARLVKD 486 Shuttleworthia sate...
EEG37967 405 KLYFMMGLPTETEEDIKGIAHLAEKIAMNYYS-MDAEYRHGRISVGASASFFVPKPFTPFQWASMCEEDEYKTKAHIVND 483 [Eubacterium] halli...
EDS12505 409 KLYFMMGLPTETDEDIAGIIHLAQKVVDAFYH-MPDKPKGRGVNVTVSVACFVPKPFTPFEFEPQDTMEELRRKQKILLD 487 Anaerotruncus colih...
EEG29942 405 KLYFMLGLPTETLDDVAGIVQLGQRIVDMYYS-LSGRPR-GKLSVSISASTFVPKPFTPFQWEPQDTREMIEQKQKHMLD 482 [Clostridium] methy...
EDO60765 403 KLYFMMGLPTETLEDVAGIPALAQRVVNAYYA-NPNKPKGKSVKVTASASCFVPKPHTPFQWEAQDTIEMLERKQKHLKE 481 [Clostridium] leptu...
EDS00384 404 KLYFMLGLPTETLDDIKAIKELADKIIDLYYN-TEGRSK-KAISISISLSTFIPKPFTPFEYEPQATEEQINERQKYLLD 481 [Eubacterium] sirae...
EDP19833 409 KLYFMMGLPTETMEDIEGIAETAQRVVDLYYK-NTNHAKGRGVQVTISCACFVPKPHTPFQFVPMDTAETLQAKQKHLLE 487 Faecalibacterium pr...
EEG46497 408 KLYFMMGLPTETMEDIKGIADTAQKVVDLFYQ-IPDRPKGKGVQVTISVACFVPKPDTPFQFCAQDRRETLREKQKYLLS 486 Subdoligranulum var...
EDM99617 403 KLYFMLGLPTETDEDVLGIADLAEKVYQAWRE-TTPEPR-RGVRITVSTSFFVPKPHTAFQWEAQISMEEYQRRVKLLRD 480 Pseudoflavonifracto...
EDQ96585 406 KLYFMIGLPTERYDDLDGIRDLAYDVIDTYRT-VHNGKLKKKFSVTVSTSTFVPKPFTPFQWHGQDTTEEVLDKQRYLVK 484 Intestinibacter bar...
EEP28374 487 TMHEqlnrKSLHYEWHHPQISVLEGIFARGDRKVADAILWAYtQKGQIYDAWSEYFNDEVWQEAFDRFGISADFYAYRQR 566 Shuttleworthia sate...
EEG37967 484 EFKIqhnhRSLSFKWHDAKTTVLEGILARGDRRIGKVIYDVY-KKGCIYDAWTEFFNYEAWMETMEENGLDYHFYTTRKR 562 [Eubacterium] halli...
EDS12505 488 TVSS----RKISVKYHDSPTSFLEAALARGDRRLCPVVEYAW-REGSRLDGWNDFFSMERWEDAAAVCGVDFSFYANRRR 562 Anaerotruncus colih...
EEG29942 483 STTT----RKIRLSWHKVDTSILEAVLARGDRRLGAVILSAW-KRGCYFDSWDENFFYDRWLEAFAECGLDPAFYASRRR 557 [Clostridium] methy...
EDO60765 482 NITS----KKISAHWHDARTSTLEGVFARGDRRLGKVLALAQ-KKGCRFDGWDDYFNYSLWMECFEECGIDPSFYNHRKR 556 [Clostridium] leptu...
EDS00384 482 IIGSkg-rRRIDVSWSHYDTTILEAVLARGDRKLSAVIYEAW-KNGCKLDGWNEYFKPDIWNAAFEKFGIDKAFYANRKR 559 [Eubacterium] sirae...
EDP19833 488 SVHS----RKIKVNYHDSTTSFLEGVFAKGDRRLAPVIVEAY-KRGCYFDGWEECFKYDTWMQTFADLGIDPAFYCQRPI 562 Faecalibacterium pr...
EEG46497 487 CVHS----RKIKVNYHDSATSVLEGVFAKGDRRLGRVIETAF-ENGAFFDTWEEYFDYDRWMSAFTACGIDPDFYNYRTM 561 Subdoligranulum var...
EDM99617 481 NMRG----RSISYNWHDPDTSVLEAVFARGDRRVADVIEEAW-RNGAKFDSWSEYFDFQRWQDAFASCGLSMDFYATRQR 555 Pseudoflavonifracto...
EDQ96585 485 ALKN----KDIKYNYHDSKTSLMEAVFARGDRRLGKVLLDAY-KMGAKFDGWSEHFKLDIYKEAMEKNNLDIAFYANRER 559 Intestinibacter bar...
EEP28374 567 PLDEIFPWDFIDCGLTRPFLEREWKNAMAGKLTPNCRDQCSGCGMRSMG-G-GVC 619 Shuttleworthia satelles DSM 14600
EEG37967 563 ELDEIFPWDFIDIGVTKEFLKREWNNAMAEKVTPNCRQKCSGCGAAKFG-G-GVC 615 [Eubacterium] hallii DSM 3353
EDS12505 563 AYDEVMPWDHLDYGVSKAFLVRENERAHAGGTTPHCRAHCSGCGANRLL-G-GAC 615 Anaerotruncus colihominis DSM 17241
EEG29942 558 EFTEVLPWSHLDYGVSDKFLQRENEKAKQAATTPNCRLNCAGCGANQLV-G-GKC 610 [Clostridium] methylpentosum DSM 5476
EDO60765 557 SFDEILPWDHMDYGIEKGFLIEECKRAYAGAATPNCREKCSHCGAACWK-G-GLC 609 [Clostridium] leptum DSM 753
EDS00384 560 EYDEIAPWEHMDMLFDRSFLVRENIKAHEEKTTANCREKCAGCGINKCL-G-RAC 612 [Eubacterium] siraeum DSM 15702
EDP19833 563 ALDEVTPWSHMDYGITHEYLVREYNKALAAQTTPPCNRACNACGANHLL-G-GPC 615 Faecalibacterium prausnitzii M21/2
EEG46497 562 GLDEVTPWSHLDVGVSHAHLVREYQKALKAETTQPCNRQCSGCGANKLL-G-GPC 614 Subdoligranulum variabile DSM 15176
EDM99617 556 DKDEVLPWDMISTGVSKRFLWREREQCYQNKITPDCRKQCTGCGADKLYpG-GKC 609 Pseudoflavonifractor capillosus ATCC 29799
EDQ96585 560 SYDEVFPWDHIDVGVSKKFLVRENEIAKSEKITVDCRHKCNGCGINAHEiGkGLC 614 Intestinibacter bartlettii DSM 16795
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