Conserved Protein Domain Family
PBP2_PnhD_3

?
cd13573: PBP2_PnhD_3 
Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold
This subfamily includes putative periplasmic binding component of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
?
PSSM-Id: 270291
Aligned: 6 rows
Threshold Bit Score: 419.575
Created: 27-Sep-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the phosphonate-binding protein family.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    #               # #                
ZP_01755782  55 RNPDTLVFAYTPvedpavyadiWAPFIAHMEEVTGkEVQFFAvqSNSAEVEAMRSGRLHVAGFSTGPTPFavnlaGAVPF 134 Roseobacter sp. ...
YP_477696    64 VNPDTLLISYTSsedpavysetWQEFTDYLKQVTGkDVQFVPvdSEAAQTEAMRAGRLHIMGTCTGCTPRavnqaGFVPF 143 Synechococcus sp...
ZP_01217679  54 SDPSTLVFTYTPvedpalykdaFADFQAHISKITGkRVIYYTvhSNSAQVEAMRSGRLHVAGFSTGPTGYavnlaGYVPI 133 Photobacterium p...
YP_327692   123 IDPDPLVFAWTPgeeqqvyqegLDPLIENISAETGrDVEVQVidSYAAMTEAFRSERLHIARVAAGNVPFavnmtGAVPF 202 Natronomonas pha...
NP_907692    46 VDPKTLIFAYTPvedpsvyvevWSEFLAHMEKVTGrKVQFFPvqSNAAQIEAMRAGRLHIAGFNTGSNPIavacaGFKPF 125 Wolinella succin...
NP_883182    58 KTPSTLVFTYTPvedpavyediFKPFTKHLSECTGkRVVFYQvqSNAAEIEAMRSGRLHVGGFSTGPTAFavniaGAVPF 137 Bordetella parap...
Feature 1                  #                              ###                            #      
ZP_01755782 135 AimgaeDGQFGYkLQVFTQADSdiq-evkDLAGrRVAHTSptSNSGNQAPRALFpslgve-pdkdyEVTYSGSHDQSMLG 212 Roseobacter sp. ...
YP_477696   144 AvfakeDGSFGYeMEVITRIDSgle-kleDIKGrRIAFTQpsSNSGYISARILIeaetgfkdgvdyEATFSGGHENSILG 222 Synechococcus sp...
ZP_01217679 134 AvkgdeNGFQGYnLITIVRKDSgin-smsDLKGkKVAHTSasSNSGNLAPRALFpakglv-pdedyKVLYSGKHDQSILG 211 Photobacterium p...
YP_327692   203 Smp-ygDGTFGNrLWIITRIDNddintvdDLVGrDVVHTEqtSGSGHLEPSLFLeeqegivpgddyDISFSGGHFRSVRG 281 Natronomonas pha...
NP_907692   126 AmmaaeDGSYGYeMEIITYPGSgik-epkDLKGkKMAFTSqtSNSGYKAPSAILkaqygleaekdfEPVFSGKHDNSILG 204 Wolinella succin...
NP_883182   138 AvkgyaDEFQGYnLIVIVKKDSpyq-kltDLKGkKLAHTApsSNSGHMAPVALFpkeglt-pdkdyKVIFSGKHDQSVMG 215 Bordetella parap...
Feature 1                  #                              #                                     
ZP_01755782 213 VVAGDYDAAPVAsevvermae-rglydpedVRMIWESDPfPTTSFTVAHNLDPELSEKIKEAFFTFDFAdtklge--efa 289 Roseobacter sp. ...
YP_477696   223 VFNGDYDAAPIAndvlnrmci-agqvqcdqFRTLYKSATfPSGPFGYAHNLDPQLQEKIREAFYTFDFAgtklak---af 298 Synechococcus sp...
ZP_01217679 212 VFNGDYDAAPVAsdvydrmvd-agrvdgseLKIIYRSPRfPTSAFGYAHNLKPELVEKIQEAFYSYRFTpemsat---fk 287 Photobacterium p...
YP_327692   282 IYLGDYEVGPVAgpipevmdnddeinaeelKVVWAGPFArPLGPMCYQYNLPEEVREGIKRAHFDYDYGgtdlye--ivn 359 Natronomonas pha...
NP_907692   205 VANKDYPAAAIAnsvlvrmle-rgvvkkeqLVSIYKSQSfPTTGYGMAYNLKPELQEKIKEAFFTFDWKgsklekefkpa 283 Wolinella succin...
NP_883182   216 VNSGDYDAAAVAsdvfkrmae-rgqvkeedFRVIYRSEKfPTSSFAYAHDLEPAFRDKMLKCFYDYRFPdemkka--fdg 292 Bordetella parap...
Feature 1                        
ZP_01755782 290 gvsKFIPITYKDQWAVI 306 Roseobacter sp. SK209-2-6
YP_477696   299 draSFAPITYKKDWEVI 315 Synechococcus sp. JA-2-3B'a(2-13)
ZP_01217679 288 gadRFAPITYKEEWGVI 304 Photobacterium profundum 3TCK
YP_327692   360 rfdTFAPIDYATHYDPV 376 Natronomonas pharaonis DSM 2160
NP_907692   284 nqtRFIPITFKEHWAVV 300 Wolinella succinogenes DSM 1740
NP_883182   293 adrFYPVTYQKDWAIVR 309 Bordetella parapertussis 12822

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap