3CPE


Conserved Protein Domain Family
Terminase_6N
?
pfam03237: Terminase_6N 
Click on image for an interactive view with Cn3D
Terminase large subunit, T4likevirus-type, N-terminal
This entry represents the N-terminal domain of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. It includes the terminase large subunit of Bacteriophage T4 (terminase gene 17, Gp17). homologs are also found in Gene Transfer Agents (GTA), including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata).
Links
?
Statistics
?
PSSM-Id: 427210
Aligned: 22 rows
Threshold Bit Score: 120.984
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
3CPE_A    183 CNLSRQLGKTTVVAIFLAHFVCFNKD----------KAVGIL-AHKGSMSAEvl----------dRTKQAIELLPD-FLQ 240 Escherichia virus T4
Q9S0A3     66 LSGGIASGKTYLACYLFLKSLIENKKlys----sdtNNFIIG-NSQRSVEV--------------NVLGQFEKLCK-LLK 125 Lyme disease spiro...
NP_944884  91 YGGAAGAGKTAALLMDSLRFIEDPNY----------NAVYFR-RNTTQLQgglwp-----aakklFGKFGGIPHEQ-KMT 153
Q835C2     60 IEIPPQHGKSTVITETFPAYYLMRHPd---------SLVMVV-SYSKELFQKfg----------rKNREKFRLFSDqLFG 119 Enterococcus faecalis
Q8TJF9     24 YGESAGSGKSWCLLYEPLRHIHVKGF----------TSTIFR-RTYPQIKNEgglwdtsqeiypyYPKGSAIPRES-DLL 91  Methanosarcina ace...
Q7VTW6     21 FVAGFGSGKTWVGGAGLCRHAWEFPRv---------NSGYFA-PTYGQIRDI-------------FYPTIEEVAHDwGLA 77  Bordetella pertussis
Q9A4P0    197 MLGGRGAGKTFAGARWITWNALAYPS-----------QALIG-PTLHDVREVmi----------eGPSGLKAMGGP-AYR 253 Caulobacter vibrio...
Q2YMT3      1 -MGGRGSGKTRAGAEWVSGMALGLPPfagk---psgHIALVG-ETFNDAREVmv----------dGPSGILSVSRL--VR 63  Brucella abortus 2308
CAP45467   47 AMTGNRCGKTYTGAFIMACHLTGRYPewwtgrkydrPVNCWAaGISTDTTRDilqsellgdwknpEAFGTGMIPKEdIVE 126
Q92NY5     62 FMAGNQLGKTLAGAAEAAMHLTGRYPdwwqgrrfdrPIVMLAgSESYELTRDgvqrlligpplneEEWGTGFLPKAaIKA 141 Sinorhizobium meli...

3CPE_A    241 PGIVewnkg------sieldNGSSiGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKI-- 307 Escherichia virus T4
Q9S0A3    126 IPYIprhtnn-----syiliDSLR-INLYGgdkasDFERFRGSNSALIFVNEATTLHKQTLEEVLKRLRCGQETII---- 195 Lyme disease spiro...
NP_944884 154 ITFP----------------SGAT-IKFTYlelekHAEGHQGIEYSAIYFDEGTHFSASQISYLQTRLRSGAEGDSYM-- 214
Q835C2    120 LQISsets---------svsEWGVeGHLGSlystsILGGATGRGARLLIIDDPIKNRAEAESKTIRDKIYNEWQDT---- 186 Enterococcus faecalis
Q8TJF9     92 WYFPv---------------SGNS-IKFAHlehekSKHNYQGAQICYIGFDELCHFSEGQFFYLLSRNRSTCGVKPYM-- 153 Methanosarcina ace...
Q7VTW6     78 AKINesnkevh---lfagrkYRGT-VICRSme---kPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGll 150 Bordetella pertussis
Q9A4P0    254 PRWEasrrr-------lvwpNGAV-AYAFSaed---peSLRGPQFHAAWADEFCAWPKPAETLAMLRFGLRLGEDPRL-- 320 Caulobacter vibrio...
Q2YMT3     64 PRYEasrrr-------liwdNGAV-ATLFSse---dpDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQ-- 130 Brucella abortus 2308
CAP45467  127 TIRRegkpgcvqavvvkhtsGGLSsLIFKSye--mSQDKFMGTAIDVIWLDE--ECPKDIYTQCVTRTATTGG------- 195
Q92NY5    142 TTRRagasgaldsvtvrhvsGRAStLLFKAye--qGRAKWQANTVDYVWFDE--EPPEDVYFEGITRTNATRG------- 210 Sinorhizobium meli...

3CPE_A    308 ---IITTTPNGLNHFYDIWTAAVEGKSg-------------------------------------------FEPYTAIWN 341 Escherichia virus T4
Q9S0A3    196 ---FDTNPDHPEHYFKTDYIDNIATF-----------------------------------------------------K 219 Lyme disease spiro...
NP_944884 215 ---KISMNPDRDHFIYDWVEPFLDEEGypdpekcgrirwyvmndgv-------mvsdwerdkilemfpleiPQTYTFISG 284
Q835C2    187 ---FYSR-LTADASVIVIMTRWHEDDLagrll----------------------------------keqtlPWEEIKIPA 228 Enterococcus faecalis
Q8TJF9    154 ---RATCNPDPDSWVADFIAWWIDQETgypipersgviryfvrhldhiywadtktelreqtkdiipeedfhPQSFTFIAA 230 Methanosarcina ace...
Q7VTW6    151 ngvDVTTTPEGFKFVYQQFVKQVRER----------------------------------------------PELAALYG 184 Bordetella pertussis
Q9A4P0    321 ---VVTTTPKPHRALKTLMAEPG----------------------------------------------------VALTR 345 Caulobacter vibrio...
Q2YMT3    131 ---VVTTTPRAVPLLKALLTDRT----------------------------------------------------VSMTH 155 Brucella abortus 2308
CAP45467  196 ---IVYLTFTPEHGLTEIVKDFLQDL-------------------------------------------------KPGQF 223
Q92NY5    211 ---AIAVTFTPLRGLSAVVARYLMEK-------------------------------------------------SPDRA 238 Sinorhizobium meli...

3CPE_A    342 SVKerlyNDEDIFDDGWQWSIQTINGSSLAQf--RQEHTAAFEG----------TSGTLISGMKLAV 396 Escherichia virus T4
Q9S0A3    220 TYNf---TTYDNVLLSKGFVETQEKLYKDIPsykARVLLGEWIA----------STDSIFTQINITD 273 Lyme disease spirochete
NP_944884 285 TID----DNPILDFLEPKYRGKLENNTPVNV---ARLRFGNWKAr--------aEGSNYWQRQWCEI 336
Q835C2    229 IAEd---DDLLGRKPGEALAPEIGKDEEWAAk--TKAVTGSRGWaalyqqrptpAGGNIFKRSWIKF 290 Enterococcus faecalis
Q8TJF9    231 KLE----DNPALTTKDPGYRGRLLALPLVER---ERLLGGNWKIr--------hTAGTMFRTDWFTF 282 Methanosarcina acetivorans
Q7VTW6    185 LVQa--sTYENGKNLPEDYIPSLRASYPPQLi--AAYLRGQFTNl---------TSGSVYANFDRRL 238 Bordetella pertussis
Q9A4P0    346 Ag-----TSANAGNLAPAFLRTLASLYGGTRl-aAQELDGVVVE----------TDGGLFRAEDLAR 396 Caulobacter vibrioides
Q2YMT3    156 M-R----TAENAGNLAEGFMQTIARRYAGTRl-gRQELDGELVEe---------RPGALWSRDRIEQ 207 Brucella abortus 2308
CAP45467  224 LVHa---SWEDAPHLSPEVKEQLLSVYSPAEr--RMRAEGVPML----------GSGVVFPILEEKF 275
Q92NY5    239 VITm---TIEDAEHYTPQERQRVIDSYPAHEr--EARTRGVPAL----------GSGRIFPVTEESI 290 Sinorhizobium meliloti
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap