Conserved Protein Domain Family
HP_OMP

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pfam01856: HP_OMP 
Helicobacter outer membrane protein
This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.
Statistics
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PSSM-Id: 280099
Aligned: 27 rows
Threshold Bit Score: 93.495
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O26031 157 GVMTGYKHFIG--KKRWFGLRYYGFFDYGHTNFSNSRAANAIspfyl--------------------sdqkaDMYTYGFG 214 Helicobacter pylori
O25481 105 SLIYGYKQFFP--KKERYGFRFYVSLDYAYGFFLKNKGVLGDslressqipksy-------reklqrketfiNAIFYGAG 175 Helicobacter pylori
O25355 100 ELSFGYKYFLG--KKRIIGFRHSLFFGYQLGGVGSVPGSGLI------------------------------VFLPYGFN 147 Helicobacter pylori
O25091  94 GLVMGYNHFFH--PDKILGLRYFAFLDWQGYGMRYPKGYYGGn-----------------------------NMITYGVG 142 Helicobacter pylori
O25695 136 SAKFGYQKYFV----SYFGTRFYGDLLLGGGALKEDAIKQPVgs---------------------------fIYVLGAVN 184 Helicobacter pylori
O26003  88 NLKTGVQSFFK----KYIGIRGVFAWDLGSGKVNYQSHKDPTn----------------------------sFFTMLAVG 135 Helicobacter pylori
O25706  49 SILQGYEVNPK---NDWAYSRYYFFIDYGNVLFNNDSTLQA-------------------------------NMFTYGVG 94  Helicobacter pylori
O25945  59 DALLGYQFFFG----KYFGLRLYGFFDYAHANSIRLKNPNYNnevvqlagqvlgkqeinrltsladpktfepNMLTYGGA 134 Helicobacter pylori
O24941 114 GFVVGYKHFFK--KSPQFGMRYYGFFDFASSYYKYYTYNDYGmrdar--------------------kgsqsFMFGYGAG 171 Helicobacter pylori
O25735  82 GVVLGGKFVAKtqAVEHVGFRYGLFYDQTFSSHKS-------------------------------------YISTYGLE 124 Helicobacter pylori
O26031 215 TDMLFN--I-IDKPKA---------------------------------------TAGFFLGVNFAGNTWTNNRVGYFKD 252 Helicobacter pylori
O25481 176 ADFLYKraF-----------------------------------------------GTLILGMNFVGETWFYETKIFKKW 208 Helicobacter pylori
O25355 148 TDLLIN--W-TNDKRAsqkyverrvkglsifykdmtgrtldantlkkasrhvfrkSSGLVIGMELGGSTWFASNNLTPF- 223 Helicobacter pylori
O25091 143 VDAVWN--F-FQGSFYqdd---------------------------------isvDIGVFGGIAIAGNSWYIGSKGQELL 186 Helicobacter pylori
O25695 185 TDLLFDmpLdFKTKKH---------------------------------------FLGVYAGFGIGLMLYQDRPNQNGRN 225 Helicobacter pylori
O26003 136 LDVIME--FpLGSYKH---------------------------------------YLGAFGGARGALVVYTDKQNFKFF- 173 Helicobacter pylori
O25706  95 GDFMVA--Y-AKNPIN---------------------------------------RWAFFFGLQLAANTWILNNKVKDLV 132 Helicobacter pylori
O25945 135 MDVMVN--V-INNGIM---------------------------------------SLGAFGGVQLAGNSWLMATPSFEGI 172 Helicobacter pylori
O24941 172 TDVLFNpaI-FNRENL---------------------------------------HFGFFLGVAIGGTSWGPTNYYFKDL 211 Helicobacter pylori
O25735 125 FSGLWD--A-FNSPKM---------------------------------------FLGLEFGLGIAGATYMPGGAMHGII 162 Helicobacter pylori
O26031 253 GyvygvntdadaymtnadgtitcgdTTPascnvginpnsvyttgklNAKVNHTIF--------QFLVNVGIRTNIF---- 320 Helicobacter pylori
O25481 209 A------------------------KDP------------------LSVYHPYMF--------QVMLNVGYRYRFSr--- 235 Helicobacter pylori
O25355 224 ----------------------------------------------NQVKSRTIF--------QLQGKFGVRWNNDeydi 249 Helicobacter pylori
O25091 187 G------------------------ITN------------------SSAVDNTSF--------QFLFNFGLKALFV---- 212 Helicobacter pylori
O25695 226 L------------------------V--------------------VGGYSSPNFlwkslievDYTFNVGVSLTLY---- 257 Helicobacter pylori
O26003 174 ------------------------------------------------KHSVVSG--------GLAINGGVMLTLF---- 193 Helicobacter pylori
O25706 133 V------------------------NTWds--------------lkDFNFHNTYF--------RAIGKFGVQFRTIvl-- 164 Helicobacter pylori
O25945 173 L------------------------VEQa-----------------LVSKKATSF--------QFLFNVGARLRIL---- 199 Helicobacter pylori
O24941 212 A------------------------DEY------------------RGSFHPSNF--------QVLVNGGIRLGTK---- 237 Helicobacter pylori
O25735 163 A------------------------Q--------------------NLGKENSLF--------QLLVKVGFRFGFL---- 186 Helicobacter pylori
O26031 321 ---------EHHGIEFGIKI-PTLPNYFFkgsttirakkqgplengqpttitgAETNFSLtqTLRRQYSMYLRYVYTF 388 Helicobacter pylori
O25481 236 --------yKNWAIELGARI-PFLTNDYF------------------------KTPLYTL--HFKRNISVYLTSTYDF 278 Helicobacter pylori
O25355 250 drygdeiylGGSSVELGVKV-PAFKVNYYs-----------------------DDYGDKL--DYKRVVSVYLNYTYNF 301 Helicobacter pylori
O25091 213 ---------DEHEFEIGFKF-PTINNKYY------------------------TTDALKV--QMRRVFAFYVGYNYHF 254 Helicobacter pylori
O25695 258 ---------RKHRLEIGTKL-PISYLRMGveegaiyq---------nkedderLLVSANN--QFKRSSFLLVNYAFIF 314 Helicobacter pylori
O26003 194 ---------LRHRIELGFKIlPTA-----------------------------RLLSSSK--RFETSPLFYAAYSYKF 231 Helicobacter pylori
O25706 165 --------yHKVDVEIGMKIf--------------------------------LTPERRS--LFERSFLFFVSHSWHF 200 Helicobacter pylori
O25945 200 ---------KHSSIEAGVKF-PMLKKNPYi-----------------------TAKNLDI--GFRRVYSWYVNYVFTF 242 Helicobacter pylori
O24941 238 ----------HQGFEIGLKI-QTIRNNYYtasa----------------dnvpEGTTYRF--TFHRPYAFYWRYIVSF 286 Helicobacter pylori
O25735 187 ----------HNEITFGLKF-PVIPNKRTei---------------------iDGLSTTT--LWHRLPVAYFNYIYNF 230 Helicobacter pylori
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