Conserved Protein Domain Family
SWIM_PBPRA1643
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TIGR04102: SWIM_PBPRA1643 
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Links
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Statistics
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PSSM-Id: 200353
Aligned: 19 rows
Threshold Bit Score: 156.699
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_01893116    4 KFFYKGRQDARQHHTAHgGFQTKASQKSGSKKFPLTLVVTSEARRQEVEAQVAEANLHANITVDarEGAVEFITELTALL 83  Marinobacter al...
ZP_01616506    3 KFFFKGRQDKRENHENH-GYQPKGMFKPGSKKYPLELVVTSPERKVEVESIVDEHQLYANISVNqsEDAEENIIDLTGLL 81  marine gamma pr...
ZP_05093948    4 KFFFKGRQNARLDHKQS-GYTEKGALKTGSKKYPLQLTVGSEQRKAEVAALVAEHALFADIQINeeAEEQENIAELMALV 82  marine gamma pr...
ZP_01217233    4 KFFFKGRKTKKPKHTSC-GFNTKRELKSGSEDAPLQLSVQTQERKEEVLLLLKEHELFASIEVN--ADRDENIEPLHYFL 80  Psychromonas sp...
ZP_01132199    3 KCFYRGRPIVMGKHNLG-TYQPKPNVKLGSQNNPLILQVQTQARQHEIEAMLEQHQLFADISIN--AEEAEDIKALDVAL 79  Pseudoalteromon...
WP_011330099   3 KFFFMGKPDIMGKNNSN-GFSPKRNEKVGSELHPLSLVVNSPQRKLEVEAIVQEHKLFATVELN--TQSDEDIRELEFAL 79  Pseudoalteromon...
WP_011469883   3 KFFFKGRVDARQDYRSY-GNKTKPEANPGSEHNPIELWVDNAEREQEIKALLDQHEVFAVVHVD--AATEENIQQLDAVL 79  Saccharophagus ...
WP_011769682   4 KFFFKGKKEKKPKHSSY-GFNTKRAAKAGTEESPFLLLVNTPVRKAEIEQILQENNLIAKIEVK--ADVSENIAELEGFL 80  Psychromonas in...
WP_011978537   3 KFFYRGRPDIMGKHNLG-NYQPKPKVKPGSEENPLILQVQSAEREHEINAILTANGLFAEVRID--SEMPEDITSLDVVL 79  Marinomonas sp....
WP_011576575   3 KFFFKGRIDPREKYQRF-GYNTQRKTKVGSENAPLHISVQNHEREVELKSVLAEHNLHAEITVD--ADKPENTIQLDTLL 79  Pseudoalteromon...

ZP_01893116   84 NKGATVTTAKLPSRNDPCHCGSGAKFKKCCG 114 Marinobacter algicola DG893
ZP_01616506   82 SKPKTTTVDKLPARNEPCSCGSGKKFKKCCA 112 marine gamma proteobacterium HTCC2143
ZP_05093948   83 NRTDTVSVSKTPNRNEPCSCGSGKKYKKCCG 113 marine gamma proteobacterium HTCC2148
ZP_01217233   81 NKPQTVSVQATPKRNALCPCGSGKKYKKCCA 111 Psychromonas sp. CNPT3
ZP_01132199   80 NKPAPQVFAKTPERNDPCSCGSGKKYKKCCA 110 Pseudoalteromonas tunicata D2
WP_011330099  80 VKSTPQVFDKVPERNSPCLCGSGKKYKKCCA 110 Pseudoalteromonas haloplanktis
WP_011469883  80 ATPKTVVLEKTPNRNDPCLCGSGKKYKKCCG 110 Saccharophagus degradans
WP_011769682  81 NKPKTITVVAQPQRNEPCPCGSGKKYKKCCA 111 Psychromonas ingrahamii
WP_011978537  80 NKPAPQIAEKAPQRNDPCPCGSTKKYKKCCG 110 Marinomonas sp. MWYL1
WP_011576575  80 KVPGTQTFVKTPNRNDPCTCGSGKKYKKCCG 110 Pseudoalteromonas atlantica
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