Conserved Protein Domain Family
RasGAP_RAP6

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cd05129: RasGAP_RAP6 
Ras-GTPase Activating Domain of Rab5-activating protein 6
Rab5-activating protein 6 (RAP6) is an endosomal protein with a role in the regulation of receptor-mediated endocytosis. RAP6 contains a Vps9 domain, which is involved in the activation of Rab5, and a Ras GAP domain (RGD). Rab5 is a small GTPase required for the control of the endocytic route, and its activity is regulated by guanine nucleotide exchange factor, such as Rabex5, and GAPs, such as RN-tre. Human Rap6 protein is localized on the plasma membrane and on the endosome. RAP6 binds to Rab5 and Ras through the Vps9 and RGD domains, respectively.
Statistics
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PSSM-Id: 213331
Aligned: 15 rows
Threshold Bit Score: 351.645
Created: 31-May-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative Rab5
Feature 1:putative Rab5 interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                #                        
ABB71126       84 DGYKQLGFQETAYGEFLSRLr-ENPRLIASSLVAge------kLNQENTQSv---IYTVFTSLYGNCIMQEDESYLLQVL 153  human
NP_508208      93 PAYKHVGHHFSTLDQLLTILy-NEPQSVAELLNSi--------DRNDITSNds-tIQVLFHLVYSCALYPEDELKIAQVV 162  nematode
NP_572704      90 DAKQLLPYEHALAYEDLFNYlyNTPYLLALSLATad------rLSLLSASQlgqiINTIATGLYGNAINTKDVELLLKLL 163  fruit fly
EFX89280       80 EGYRHLGFHEALFSEFLQRLr-ENAPLLAVCLASge------kLSPETMPTv---ISVVTSSLYANFLLGDDEKYCLQLL 149  common water ...
XP_002735447   85 DAYKHVSYHDTVYGEFLKMLr-ENPQLLGHCLLQe--------NSVEDTQNi---AKVVMSAVYGNCVMQEDERHVLLLL 152  Saccoglossus ...
AEO34232       94 DSYRVLGIHDSAYATLLRSLr-QDPGLVAVCLVR---------GPTSQLQAa---VDILVSCVYGCGTLSEDQTLMLQLL 160  Amblyomma mac...
XP_002126791   82 DGYKELGYQESMYSQFIEAFi-NNPTFAAACLAYgd------kLGLDSTSDv---ARTMVMGCYGNNMVADDHRQLLELI 151  Ciona intesti...
XP_002156923   88 DASNYLSYEDYKYGHFLLCLk-ENPRLIALILNYcdt----krIQNSTMQL----VKLFLSSLYGSCIQQVDEVLVLKIL 158  green hydra
EFA76059      722 NTVTELSIQLKHSLERLLILvrNEPAILTETLWRagy---lreDSEKQSHHn--lSQAIVFSLFGNCFTATDERLLLLLI 796  Polysphondyli...
EGG14471     1513 IVTIELSSQLKHSMERLIVLmrTEPTILAETLYRagylrdegdKSLKATHSd--lSQAIVFSLFGNCFTATDEKLLLLLI 1590 Dictyostelium...
Feature 1                        # # ##            #  #   #                                       
ABB71126      154 RYLIEFELKes-dnPRRLLRRGTCa-------fSILFKLFSEGLFs-AKLFLTATLHEPIMQLLvededhletdpnklie 224  human
NP_508208     163 CNLLKLQLYrsgseMRTILRKETSi-------sTRFYKHFVELIHp-TMVYLTKALRKGVLDVIqlgsfwldidak---- 230  nematode
NP_572704     164 RELIEIQLLts-eqPRRLLRTNSSs-------fARLYQRLVESLFs-ARIFLTAALHAPLMGVLseheiwldldphklmq 234  fruit fly
EFX89280      150 KHLMELQLVss-enPRRLLRHGSCa-------fSRLYKAFTEGLFs-AKVFLTAALHDPILFLLmedemyldvdpirain 220  common water ...
XP_002735447  153 QALVENELAgn-ddPRRLLRRGSCv-------fSMVFKQFTEGLYs-GRLYLTAALHEPLMALLmedecyletnphkvvd 223  Saccoglossus ...
AEO34232      161 RELMVLQLEgc-dnVRRLLQHGSCa-------fSRVYKAFTEGLPg-AQLFLTSALRSALIQVLvdddlyldidpskavv 231  Amblyomma mac...
XP_002126791  152 ETLMLLQLAti-eqPSRLLQKGTSa-------fCTVFKLFAESLWs-GKLFLMSALHQPIMEIImdhelfletnpqkvla 222  Ciona intesti...
XP_002156923  159 KELMILQVF-----PCEDLLDFFCgkrstdnafACVMTIFSGSLFs-SKLYLTAALHGSVMQVIvddsifldvevskalc 232  green hydra
EFA76059      797 RKIAELEFSkf--sDKRKFGTQEP---------FSFTLLSTYLKCtfGKPYVISVLKDLIVSIIqdhnmnlendpqkka- 864  Polysphondyli...
EGG14471     1591 KKISEIEFSkcpddQKRKFGSQEP---------FCYTLLSTYLKYtfGKPYIISVLKDLIVAIIqdhnmnleddpqkka- 1660 Dictyostelium...
Feature 1                                                                                         
ABB71126      225 rfspsqqeklfgekgsdrFRQKVQEMVESNEAKLVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCEDRLEv----g 300  human
NP_508208     231 ------qstarflrdnkqNEDRLPEYRALVVSKLVDFVDTFLENISKALPMLPPNLNWIIRDIFCSLYEVVDDVsa---i 301  nematode
NP_572704     235 tftpkerekrfgregdeeYQRNVARFHAETLGKLHSHVQEFVKSLQQSWALFPSSLRWLLQTLSQQLRQSLRHEe----q 310  fruit fly
EFX89280      221 rypsyerekrfgregtqeFNSAIQKYRTTAIDRLVQLTQRFVSGLAASVACFPSSVAWLVRQMRSLLTHSMRIDa----r 296  common water ...
XP_002735447  224 nftqqeqeklfgsrgspeYQQNVRQHLESNISRLVQHCNKFIQSLKDSMYCFPQSLDWIVSQIYKITTRTGKIKp----e 299  Saccoglossus ...
AEO34232      232 rfppeerlrhfgpkdspdYSRRLGAYRAWTIDRLARLAQGFVEGLRSSWPWLPAQLAWLVRLLHAMLTRNGATEd----p 307  Amblyomma mac...
XP_002126791  223 rlssneiakrfgsqdtpaFQEKLKQHVERTEQALIDICSSFVDSLLQTMTCFPQSLRWIISRAFHIVKDAGVVSe----s 298  Ciona intesti...
XP_002156923  233 riapkvavekfgrpgtveAHNKTKQHMNMLHNHLIHLCKKFLKNLVDKVYCFPQSLCWAIGQLYQGMVQKMKLPq----a 308  green hydra
EFA76059      865 ----mlaeigldeepqvdQNLLLQQFSGEFLQRVIALSTGLPYGLRWISKVIIEMYREHLRSTRPADFEETDFTrikdsa 940  Polysphondyli...
EGG14471     1661 ---mlaefglleeevnvdQKALLQQFSAEFLQRVLALQSGLPYAVRWMCKVVLGYWRKHVRASRPDDWVPTDFSdikdia 1737 Dictyostelium...
Feature 1            #       ##  ##  #                      #  ##  #   # #    ##                  
ABB71126      301 EVRAMRTDLLLACFICPAVVNPEQYGIIsda-pinEVARFNLMQVGRLLQQLAMTGSEe-GDPRTKSCl--GKFDKSCVA 376  human
NP_508208     302 ELSHACKDMIVSNLICPAIISPQKFGVVdndvrvgTIVNHNLVQIAMIIQMISLREFEs-PPEEYKEFl-sQCRNTHLIS 379  nematode
NP_572704     311 EIRQLLTDLVFTHFISPAIASADLLGIIdvn--vsERMRHNLNQIVKLLQRLALNDEDs-ELVQLMELlmlGQTGEDVVA 387  fruit fly
EFX89280      297 QVHAICVDLVFAFFICPAIVNPDPCGIVeap--isPIARSNLIQVAQILQVLVHSKWEp-FDPKLDDLy--SRFDKDCVS 371  common water ...
XP_002735447  300 EVRAMCIDMLLLLFICPAIVNPEQYGIVsdi-lisEIARFNLMQVAQILQALSMKMYSt-TDSRSNDIy--SRFPKDCMS 375  Saccoglossus ...
AEO34232      308 RAGVVCADLVFAFFICPAVVSPELHGLVdth--itPIARFNLMQVAQIIQVLALARWEr-PDPRLSDLy--DRFPRDCMS 382  Amblyomma mac...
XP_002126791  299 EARSLSADFLLHQFVCPAIVNPELYGVTgdv-plsDLTRFNLMQVAQVLQVMAHWNET--SQQNDSFY---SKLDKGPMR 372  Ciona intesti...
XP_002156923  309 NAKALIGHIIMSYFICPAIINPEPYGINsda-disETARHNLGQVASILRSLALLECGlkDEKILKSLt-sCWFDLYLTC 386  green hydra
EFA76059      941 VERELMIHLIFENFFIPALLRPDHYGVLpgl-nisQKTRHNLIQIAKMVLTFLSTPQS--IPPWLNES---MNLEARINE 1014 Polysphondyli...
EGG14471     1738 HENELIIHLVFENFFIPALIRPEHYGVFtgl-tisQKTRHNLIQIAKMVLTFLTNPQS--IPTWLNES---MNLANRIQE 1811 Dictyostelium...
Feature 1                                                                                         
ABB71126      377 AFLDVVIGGRAv---------ETPPLSSVNLlegl---------------srtVVYITYSQLITLVNFMKsvmsg----- 427  human
NP_508208     380 EMMDALLVEKL----------APDVEITSLI----------------------ANGTAESDMATKSSFVGt--------- 418  nematode
NP_572704     388 ILPQQSDFERSq---------LAINQRELAQlve-----------------ffRLLTARDEYDISVEERQrlqril---- 437  fruit fly
EFX89280      372 SILDAILDDGTps-------aNVAPFSPSSTqsspsadpsvdthrlllglnrsVALVTESELQTFVQFLRtvltn----- 439  common water ...
XP_002735447  376 SFVDVMIDSLGs---------EDIPPTSQQLegt----------------trsAALITQRELYALVAYLRsvqts----- 425  Saccoglossus ...
AEO34232      383 SLLDSLLLGDGsvgsqgsqaaAAAVPTIAALqqee--------------laraAFLATEVHLATLISFLRsvtwp----- 443  Amblyomma mac...
XP_002126791  373 RLIDVVISPSNqd-------sTPDNIVSQHTht------------------nrSVFITIKQLVQLIHFLNdlqks----- 422  Ciona intesti...
XP_002156923  387 LKQADKIAGLIf---------GVISEYISALidgsekvdie--qlddamiikcSLLMSEHDLKTMIKCLLlletynipil 455  green hydra
EFA76059     1015 YFNDLSMVQEPet-------yYNRPVYEMELg--------------------qNLLVSSTDLFQILELIYhnkpesk--- 1064 Polysphondyli...
EGG14471     1812 YFSEVSQVEEPdt-------yYHRPIYELELg--------------------qNLLVSSTDIFIMMELIYhnkpeee--- 1861 Dictyostelium...
Feature 1                                 
ABB71126      428 --dqlrEDRMALDNLLANLPPAKP 449  human
NP_508208     419 -----vADVNVLIKIIRNAPSTSD 437  nematode
NP_572704     438 -gripkQQVQQQQQTPKDAPDSRE 460  fruit fly
EFX89280      440 -dgleaNDKRTLESLLQPVPLLCS 462  common water flea
XP_002735447  426 --npnhPESKDVETILSTLPPTPP 447  Saccoglossus kowalevskii
AEO34232      444 --asesSHQKALGSLLEHLPMPSE 465  Amblyomma maculatum
XP_002126791  423 --dvrgVDQSTLAEILNHLPDNPP 444  Ciona intestinalis
XP_002156923  456 neegytELLDNLPTFPQHWANEFP 479  green hydra
EFA76059     1065 dvsetaSLQLEMVEMIKDVQPAHH 1088 Polysphondylium pallidum PN500
EGG14471     1862 desetkQLQLEVVEMIKTVQPAAQ 1885 Dictyostelium fasciculatum

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