5MRC


Conserved Protein Domain Family
VAR1

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pfam05316: VAR1 
Mitochondrial ribosomal protein (VAR1)
This family consists of the yeast mitochondrial ribosomal proteins VAR1. Mitochondria possess their own ribosomes responsible for the synthesis of a small number of proteins encoded by the mitochondrial genome. In yeast the two ribosomal RNAs and a single ribosomal protein, VAR1, are products of mitochondrial genes, and the remaining approximately 80 ribosomal proteins are encoded in the nucleus. VAR1 along with 15S rRNA are necessary for the formation of mature 37S subunits.
Statistics
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PSSM-Id: 461621
Aligned: 15 rows
Threshold Bit Score: 66.6708
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MRC_CC                135 IIMSKTINQHSLNKLNIKFYYYNNDINNNnnnnnn---------nyymnMMNKLM--------NIMNNNMnnnlcnilSY 197
CDH52946                19 QLTSTPQFRHSPSRVTIQMFYYADPNFGD--------------------LSQFKL--------QPLEQLV--------SN 62 
RCI05854                50 HLTSTPAFRHSPSKVTIQLYYYADPAFTN--------------------LADFKM--------EPLEKLI--------SS 93 
Q75G41                  94 ILMTNLKFEHRTNSIHIKYYFYNYMNINNdelskl--------ynnymmSINNQMinllnndnNSLNNLM--------TK 157 Eremo...
RIB24847                46 KSLSDITIKHTPKKVVFQQYYYANTIPTQrrgleeidngsakeetnkdiFNPIAL--------DKLKERL--------SK 109
PKC14164                45 LPLNDFQIKHSSNKVVIQQYVYKP-MLNSrtntsslkgsvatqedlnghLSPISL--------KKLSELY--------ST 107
EKC97177                41 ALSSKPTFIVSRDKVIVNVFYYIPKSEAEleedkgykkv-rygrkkiqsLNQNTL--------NNLGRTL--------RK 103
Q0H8Z0                  83 FFISKPNFSHTNSKVTIQLFYYTAspknhlvn----------tsnndltTVSSHF--------SDLSTTL--------AQ 136 Ustil...
PRJNA474956:DNF11_4091 101 ILISKPKFQHSTNEVQITLFYYYNdenpqak-----------dfvqhhyLKESKV--------LELCKSL--------SS 153
CCO75421                78 VLISSPIYNQSNNKVNITLFYYHKnnq-------------------meiLSQEKL--------QELCKTL--------S- 121
5MRC_CC                198 YY-KKKVTIEPIKLSYIYLNSDIFSKYISlNDMDKYNNGIltnyQ----RMLNNIMPKLNDHNISMNYINNInninnnky 272
CDH52946                63 LYpNKYVDMRVIRLHYPYMNAEILAKYLTvNSQKKSWSAL----T----RPFMKNMPIVKAPLAHNMPFAVQ-------- 126
RCI05854                94 LYpGKYVDLRLIRVHYPYMNAEILAQYLTiNSERIGWSQL----T----RRFMKGVPLVKPPLPHNMPFGVQ-------- 157
Q75G41                 158 YY-NKKVYINTYKLNYMYLDTELLSQTLT---NIYNNNGL----SlkslKMIINKLPFNNDMLLSKNYVNKM-------- 221 Eremo...
RIB24847               110 LY-NKDVEFNLIKQHYPYLNSKILAQYIAlNASRYRFRQI----R----RSLFKKIPLVGG-NQQQNDLNAT-------- 171
PKC14164               108 LY-KKPVEFKIILLKYPFLSSKILAQYLAmQTKKHNIRQI----R----RNLFKKVPLASLINYERGNLVGG-------- 170
EKC97177               104 LF-DRKVELQFVKLNYPYLNRTILAKYIGiNRNNYKFNKV----V----GSIFRNRPVVKNNFENFSNKY---------- 164
Q0H8Z0                 137 LY-QKEVHVIATRLYYPYLNSDILSQYLAhNGPSNTFMDF----Q----EAILTNPSL---------------------- 185 Ustil...
PRJNA474956:DNF11_4091 154 LVfKKKVNLNLIRVRYPYMNSQILAQYLCgKTDKNKFSQL----C----DALVSKSSVKVGLFGVVGKEG---------- 215
CCO75421               122 LIfHKEVHIEMIRVHYPYMNSQILAQYLVnNASKKNFLKF----S----DAILTYPSLKAGVYGKAGEE----------- 182
5MRC_CC                273 nnminllnnnnninnnnnynnnnnnyigninniynnmtidN-----IP-------------------------------M 316
CDH52946               127 ----------------------------------------WqnllpQV-------------------------------A 135
RCI05854               158 ----------------------------------------WnsllpQT-------------------------------A 166
Q75G41                 222 ----------------------------------------N-----KYnltinnnlnnnkkdlinlytldnklldlsitN 256 Eremo...
RIB24847               172 ----------------------------------------SalkwiQLsr----------------------------lG 183
PKC14164               171 ----------------------------------------I--------------------------------------K 172
EKC97177               165 -------------------------------------------------------------------------------T 165
Q0H8Z0                 186 -------------------------------------------------------------------------------H 186 Ustil...
PRJNA474956:DNF11_4091 216 -------------------------------------------------------------------------------E 216
CCO75421               183 -------------------------------------------------------------------------------D 183
5MRC_CC                317 DILMYKYLVGWSIKFKGRLSNNNG--RTSTTNLLNGTFNNKk--------yLwsniNNnyklnyipsNHNLYNNSNINKN 386
CDH52946               136 NDKLTTAIQGVKYQVSGRLGRRSGsgRSQILRKSIGTFQFTs---------H----RS---------LVDVGRHTFSNKN 193
RCI05854               167 NGQLTSAIQGIKYQVSGRLGRRKGasRTQVMRKSLGTFQFTs---------H----KS---------LVDVGRHTFANKN 224
Q75G41                 257 NMLLGKYLVGSNIQLKGRT-LNRNitRTMKMNIMKGTFNNYmyq----wskL----NNlyklnymstNINKTNNTFINKN 327 Eremo...
RIB24847               184 QQILPTHLSGVKIQISGRMSLRKGsaRTSVINKSIGSFRFHs---------L----ENt--------MIDYAKVERKNQN 242
PKC14164               173 NYYLPTHLAGIKLKISGRMSLRKGaaRSAVVTKSIGRLRTNt---------V----DKs--------MIDYAKTEGKNMN 231
EKC97177               166 RLDLPSHMLGMKIRASGRLNSERAkpRLTVIERKLGNFNDKng-----------------------tYTELGSWTIKSRH 222
Q0H8Z0                 187 KTNLPAHISGIKVQVSGRLVTETVipRITVKSYLIGSFQRNs---------N----NTanklgdfvtSIDYSKFTTKNEL 253 Ustil...
PRJNA474956:DNF11_4091 217 KYILPSYIDSICLELSGRIGSERVvpRMTKQVYRMDSPNTNsgislqmsnvS----ADsln----nkVEDFGKYTAKNHL 288
CCO75421               184 SFILPSYIQNIRLELSGRLVTEKVvpRVTKKIAQIANPNADsgvylleaglS----NDtve----nvVVDYGKVTSKNEL 255
5MRC_CC                387 GKYNIKVKLNFI 398
CDH52946               194 GSITVKVWIASA 205
RCI05854               225 GSITVKVWIASA 236
Q75G41                 328 GMFNIKIKLNTI 339 Eremothecium gossypii ATCC 10895
RIB24847               243 GAYCVKVWLSSS 254
PKC14164               232 GAYCIKVWLSSA 243
EKC97177               223 GAVTVKVWITHK 234
Q0H8Z0                 254 GAFTVKVWICQR 265 Ustilago maydis 521
PRJNA474956:DNF11_4091 289 GSFTLKVWITSL 300
CCO75421               256 GSFTLKVWITSV 267
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