3G60,4F4C,3WMF


Conserved Protein Domain Family
ABC_6TM_Pgp_ABCB1_D1_like

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cd18577: ABC_6TM_Pgp_ABCB1_D1_like 
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Six-transmembrane helical domain 1 (TMD1) of P-glycoprotein 1 (Pgp) and related proteins
P-glycoprotein 1 (permeability glycoprotein, Pgp) also known as multidrug resistance protein 1 (MDR1) or ATP-binding cassette sub-family B member 1 (ABCB1) is a member of the superfamily of ATP-binding cassette (ABC) transporters. Pgp acts as an ATP-dependent efflux pump, binds drugs with diverse chemical structures and pump them out of the drug resistant cancer cells. It is responsible for decreased drug accumulation in multidrug-resistant cells and mediates the development of resistance to anticancer drugs. Pgp consists of two alpha-helical transmembrane domains (TMDs) and two cytoplasmic nucleotide-binding domains (NBDs). This protein also functions as a transporter in the blood-brain barrier. In addition to Pgp, breast cancer resistance protein (BCRP/MXR/ABC-P/ABCG2) and multidrug resistance-associated proteins (MRP1/ABCC1 and MRP2/ABCC2) function as drug efflux pumps of anticancer drugs, and overexpression of these transporters induces multidrug resistance to a broad spectrum of anticancer drugs including doxorubicin, taxol, and vinca alkaloids by actively pumping the drugs out of cells.
Statistics
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PSSM-Id: 350021
Aligned: 692 rows
Threshold Bit Score: 166.111
Created: 11-Aug-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:TM helix 1 [structural motif]
Evidence:
  • Comment:All members of this ABC transporter family contain 6 alpha-helices in each transmembrane domain (TMD) for a total of 12 TM segments in the complete transporter.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      ########################                                                        
3G60_A      50 MLVGTLAAIIHGVALPLMMLIFGDmtdsfasvgnvsknst-------nmseadkramfakleEEMTTYAYYYTGIGAgVL 122  house mouse
ODV92316    49 IITATLSSLASAVLIVLMVLYTGQlfqtiqdys--------------------ygsdfaaanDALLASTYRLLIVCAaFF 108  Tortispora casei...
P78966     104 IFGTLIFTCLSAALEPLMTWTTGKvfdalsqyat-------------------sqitlgkmiSLINFNSLLITIFGLaSC 164  Schizosaccharomy...
KXS15947   107 MVLALAAAVTSGITLPLLNIFLGDiigtitiydprcdstdpdvrgatraayqgvecgvdkfnEDIRRGCFIFAILGViQL 186  Gonapodya prolif...
KGG50946   481 IGTGLVCGLVAGLSVSLMNYLLGDiinlfidfliaknv-----------dpssvllqeklfwTEMTYSLTFLSILGVvIF 549  Microsporidia sp...
EXX69518   110 MTLGMFFSVLSGLLIPLMTHLLGKifgaftdkqi-------------------gaitnqvfeEKIKTLLFQFSLLGVgSF 170  Rhizophagus irre...
OON07221   126 LLPASAISLAEGTIQPLRNLLLGQftsifsvyataqkhaagmn-ttigytdtvtdedtavfaSSLHWLLMYALTLAFsSW 204  Batrachochytrium...
EEB07515    73 LIFVVLLTLSTGVLEPLMTWASGRlfdgfskyar-------------------gdystrdlnKNVNTNVGLVAIFGLiSL 133  Schizosaccharomy...
ODQ73236    20 ILLGIIMTVISGVHPSVTSILIGKvfncisayvvae---------------ssgykesypltSKVTPYLVGMLSVGV-IS 83   Lipomyces starke...
CDO55963   101 LIPAFVAALLSGAAKPAQAMLIGKvfttltrysk------------------gdyttpgeflVAATRYCVAIIGLGAaGF 162  Galactomyces can...
Feature 1                                                                                      
3G60_A     123 IVAYI-QVSFWCLAAGRQIHKIRQKFFHAIMNQeig--wfdVHDVGELNTRLTd--DVSKINEGIGDKIgmFFQAMATFF 197  house mouse
ODV92316   109 PASGM-SLGIWTYLSESLVGHLRALVFQKLLREdla---wfDSSDGSIANINNhhiYLDDLQRCYSIAMhnIASGLAVCI 184  Tortispora casei...
P78966     165 VFSFG-VRFLWQYLSAIAGKRARSLCFHVLSSKsst--fysLTESKSGLVNSVd-rCIQFYEKSISLPMfhIAENLAISL 240  Schizosaccharomy...
KXS15947   187 ATVYI-HNAVFSYAAETQARRIREAFFKSLLTQdqg--wfdSQLTGDLVTRITa--DIAQVQEGLGPKMsqIVQFGSAFV 261  Gonapodya prolif...
KGG50946   550 QTGYW-MLALLNWSAARQCYRLKTTLFASLLEKeis--ffdGNSTGELINRSAa--DIFLVQEGLSGKMglTALYAATFI 624  Microsporidia sp...
EXX69518   171 VLMGS-MITCWMWTGERQSKKMKQIYFKSLLRMeiayferdDVTSGGLLTSVNk--DTEDVQAVISEHMgyLIQDVVTVV 247  Rhizophagus irre...
OON07221   205 LLSFA-QSFVFKLIAQKQVQILRTRYMNALLHSssn--wreSNPSQQLVQTISs--DINHIEAVFSEKLpwVLRNLVVFL 279  Batrachochytrium...
EEB07515   134 FLDMI-VRFCWRIVGDMVARRTRLLIFGKLAEKrasf-yllNDNTIGLINSMDr--NVLAYQRSVSLSMnaLLENLAIVV 209  Schizosaccharomy...
ODQ73236    84 ILIWNlLLFSWTWVAENQLEMARRMLLESLMTKdnaw-ydgLDSSGALVTKTQk--FLDEYQEGASLSFghALFYTARGL 160  Lipomyces starke...
CDO55963   163 FFDWT-MLTCFDLFSTHSLLRARRKVFVRFMTRdfawydanSGIMGTLTTLNR---CFGDFQGATSMSLalVCQACSTII 238  Galactomyces can...
Feature 1                                                                                      
3G60_A     198 GGFIIgFTRGWKLTLVILaISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNL 277  house mouse
ODV92316   185 ASIVVaLYFSWSLTLVTLaTFPVILAFAVFMSNKMQQNIEREKDQQSVSSAILQWALSNPLTVTLFNSAYYEANRFKQSN 264  Tortispora casei...
P78966     241 SCLIIsFRYSWSLTLVVLaSYPIIILVVGFINSFLSSAYEKDRKSSEKAASILEKSISAIQTVIFHSMQDTEYRYFADAC 320  Schizosaccharomy...
KXS15947   262 TGILLgFLKGWQMTLVIFaGVPIIGVAGALLGVLLQSMATQNATAYAGAGAVATQAFAAIKTVVAFGGESKEDRKYGKCL 341  Gonapodya prolif...
KGG50946   625 SCFSVaFFRCWQLTLVVCmIFPIISASNALFSRVSSRFSEKAQPRYARASAYAGEVIAGIRTVVSFGAQSSECESYSDLA 704  Microsporidia sp...
EXX69518   248 STFVLaFISHAILTLVILaSMPLLLLSLAYTSRRASPLIVQERDIFVQAGNVLENALSAIKTIRAFNGEEKEEKKHQNYL 327  Rhizophagus irre...
OON07221   280 VGLYLaFRSSIQLSLAVLaVFPIVGMVLGFMHHNSAVFDKKLRDSYRSAGQIAHEVLISIKTVMAFNRQSHEYNRYVKHL 359  Batrachochytrium...
EEB07515   210 ASLVIaFHYSWSLTLVVIaIFPVLAIFVGIINSLLFSSMEKERVTSENCASLLERAVAAIRTVRFHSMKTFEHNEFIHVM 289  Schizosaccharomy...
ODQ73236   161 VSLCVaMYYSWKLTIVILaTLPAIMIAQTITNIPKDRYTKLEKQVSSRAVNVVDWAISSLQTVKLFNGQSIEAAKFSAHT 240  Lipomyces starke...
CDO55963   239 ASFCFsFYYSWAMTLVSLcMVPLMLIVSSILSRYMSRTYYQFKAITEDAGSLVDWAITSLTTVKQFNGQSVVFDRFVDIL 318  Galactomyces can...
Feature 1                                                                                      
3G60_A     278 EeakRLGIKKAITANISmGAAFLLIYASYALaFWYGTSLVIskeys-igqvLTVFFSVLIGAFSVGQASPNIEAFANARG 356  house mouse
ODV92316   265 GmasAYFNKAISWLSVQlGSIKCLSLLMFVQgFWYGSYLYRrdqvs-lsdiITVFLCCISAAEGFERYASHMPFIAKAKI 343  Tortispora casei...
P78966     321 StssKSFLRFSFLDAFQgGVSQFFLYSVFFQgLWFGNHLATtkrvn-vgqvVTVFGSCLSVASSLQQILPAIPDLIKGKF 399  Schizosaccharomy...
KXS15947   342 DeayRVGRRAALVQGFGlGFVNMLIYWVFAFgFWYGSTLVAngsys-ggqvLTVFLSVLVGAFSLATVGPNLPFIFTAQG 420  Gonapodya prolif...
KGG50946   705 QeaaKKNEPSFLISGASmGIICMLAFFSYSLaFWSGAKLIEsgvilkrgviLSVFFCVISGAVSVRHIFQNFEIVSRGIL 784  Microsporidia sp...
EXX69518   328 QaanSVSSSLAWTYGLRsGLTQFLILSLFVQgFWFGATLVAnkrla-pgevLSVFYSAMLGLGVLKNILPRIVSIERGKN 406  Rhizophagus irre...
OON07221   360 AdacSVHQSKCVFDGFGwGTYSCTMFLAFAVsFYVGGRLVAansit-pgdaLNSFSQIAVGITSLGNIGQASRDFQHGVH 438  Batrachochytrium...
EEB07515   290 HacsKAFLRFSFFTSIQaGVTAFLLMAVFFQgLWYGNHLVVvgklt-pgkvVTVFWTCVSAMASLNQIVPIVPDFVRGKY 368  Schizosaccharomy...
ODQ73236   241 HvssKLMHKIAIIYAVQqGILKLLVLMLFLQgFWYGGHLVRnggis-sgsvLTVFWCCNSLTYCVSNIGVKLADINKAKV 319  Lipomyces starke...
CDO55963   319 KrgsQVYFLFSHYAGLQqGLARFLVLGMFVPmFVLGTFLVHkgkie-sgvvVTVFSCMFMISGAFSALGMRVESLRKGQV 397  Galactomyces can...
Feature 1           
3G60_A     357 AAYEV 361  house mouse
ODV92316   344 AGTKI 348  Tortispora caseinolytica NRRL Y-17796
P78966     400 SSHFI 404  Schizosaccharomyces pombe 972h-
KXS15947   421 AAYQL 425  Gonapodya prolifera JEL478
KGG50946   785 AASTL 789  Microsporidia sp. UGP3
EXX69518   407 AVNSI 411  Rhizophagus irregularis DAOM 197198w
OON07221   439 LLQLL 443  Batrachochytrium salamandrivorans
EEB07515   369 SAFTI 373  Schizosaccharomyces japonicus yFS275
ODQ73236   320 AAESL 324  Lipomyces starkeyi NRRL Y-11557
CDO55963   398 AVAKL 402  Galactomyces candidum

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