Conserved Protein Domain Family
CcmE

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pfam03100: CcmE 
CcmE
CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organizms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Statistics
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PSSM-Id: 460805
Aligned: 214 rows
Threshold Bit Score: 91.0151
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_004246735           91 LQTRRLWTYAITFSCIAGFIVIVLNQFQDQL--VFYLTPTDA---LEKhaENP-TRSKFRLGGLVLENSVTPIpNSPEME 164
CAN99424               37 rpSRSLGLLATLLVMVGALVALFLVGFKEAA--VYATPVDQL---LAS--KDKlAGRKVRVEGELVPGTLVKRdSPCEYR 109
Q1IP94                  4 rkpsytRFALAIVFVLVPIGYLAVTGARDKDiaSYYKTIQEI---QTM--GPEvYEKRLRVAGTVAEGSIKR--QGTRVE 76  Candid...
tigr:ACP_2762           3 tkGQTYKVALAILVILGSIGYLAVSAEQSNK--SYYVTIQEL---QTM--GNKaYTRHLRVSGQVVPGSIER--QGPNAN 73 
WP_013568302            3 NQRQIIRFVIAAVIIVGTVTYLAITGANAGK--SYYCTIAEM---HGM--GDKaYSRSLRVAGNVKPGSIHR--FGPRAD 73  Terrig...
WP_014785417            4 ksassVKVIVASVVIIAAVLYLAISGARDSKatSYYCTIGEL---QGM--GKKaYSRNLRVAGNVKPGSIHR--MGTHAS 76  Terrig...
jgi:AciX8_2128          5 SQKSPVKFIIAGVIVLATVAWLALSASGDSK--QYYVTIGEL---QQL--GNRaYTRHLRVAGNVQPGSINH--VGTNAT 75 
jgi:AciX9_1249          1 mqKSPIRIIVASVILVAVVAWLAISGAQANK--SYYVTISEL---QGM--GGKaYTRHLRVAGNVKAGSIQR--VGTSAH 71 
PRJNA194094:J421_2741   1 -mkARTKFLIGGLLVLGSAGFLMASSIKETG--QYYLTPGELaakVSR--DPSfRESGVKVGARVVPGSIKRDpGGRSLT 75 
BAH37861                1 -mkaRNKFLLGGVLVLGTAGYLMASSIDETA--TYYLTPSELagkVTA--NPRfVQNGVKVGARVVSGTIVRQpGGRELT 75 
XP_004246735          165 FVITDlitDILVKYDGS--LPDLFRE----GHSVVVEGfikpfteemkkkeneilsekklQLTEkarsGDcYFAATEVLA 238
CAN99424              110 FQIHGtqaPLPVRYAQCv-IPDTFRDvpsgGVQVTVEG----------------------TLSQ----GG-DFEASLVMA 161
Q1IP94                 77 FTLEEqgkTLNVSYIGTeaPPDTFKD----KSQALAEG----------------------KMGR----DG-VFHAQKIQA 125 Candid...
tigr:ACP_2762          74 FTLYEqnrKLRVEYVGEepPPDTFKG----NAPALAVG----------------------TFGR----DG-VFHATELQA 122
WP_013568302           74 FILLEqgkELPVNYMGSepPPDTFKD----DAQALAMG----------------------HLGR----DG-VFHANQLQA 122 Terrig...
WP_014785417           77 FVLLElgkELPVNYDGAepPPDTFKD----DAQALAMG----------------------HLGR----DG-TFQANQLQA 125 Terrig...
jgi:AciX8_2128         76 FTLVEqgkLLRVNYQGAepPPDSFKD----DAQALAIG----------------------TYGR----DG-VFHATQLQA 124
jgi:AciX9_1249         72 FTLMEqgkALQVAYQGSepPPDAFKD----DAQALAIG----------------------TYGR----DG-VFHATALQA 120
PRJNA194094:J421_2741  76 FDMTDgqqTYAVAYRGI--APDTFTD----GVDVIVEG----------------------RLGS----DG-TFRATTLLA 122
BAH37861               76 FKMTDgahTYDVHYRGL--IPDTFTD----GVDVVVEG----------------------RLDA----TG-TFQATTLLA 122
XP_004246735          239 KHDEKYMPP 247
CAN99424              162 KCTSKYDPN 170
Q1IP94                126 KCASKYAPK 134 Candidatus Koribacter versatilis Ellin345
tigr:ACP_2762         123 KCASHYAPg 131
WP_013568302          123 KCASKYAPv 131 Terriglobus saanensis
WP_014785417          126 KCASKYAPA 134 Terriglobus roseus
jgi:AciX8_2128        125 KCASKYAPA 133
jgi:AciX9_1249        121 KCASKYAPA 129
PRJNA194094:J421_2741 123 KCASRYEna 131
BAH37861              123 KCASRYEna 131
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