Conserved Protein Domain Family
cas1_DVULG

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TIGR03640: cas1_DVULG 
CRISPR-associated endonuclease Cas1, subtype I-C/DVULG
The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.
Statistics
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PSSM-Id: 188360
Aligned: 22 rows
Threshold Bit Score: 496.375
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011134784   3 RQLNTVYVTTEGAWLRKDGENLVMEVEGSERARLPVHMLEGLVCFGRVLVSPPLMGFCAERGIVISYLSPNGRFLARVEG 82  Chromobacterium...
WP_011478973   3 KLLNTLYVTRQETYVHKERDTIVINSAGEKLAQFPALTISNILCFGQVSVSPPMMGYCGENGIGLVFYTEYGRFLARMIG 82  Methylobacillus...
WP_011396665   3 KLQNSLYVTRQESYLHKERETIVIKQGKDKLAQFPAHAVANIFCFGQISVSPFLMGYCGEQGIGLVFFTEYGKFLARIQG 82  Hahella chejuensis
WP_011200158   3 KLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPVHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTETGRYLGRLQG 82  Mannheimia succ...
WP_011392030   3 iLLNTLYLMTPRTLVRLDHETVKIEVEGELKMQIPLHHLGSIVCFGDVTLTTPLIMRCAEDKRLIVFHDQHGRFKARVEG 82  Moorella thermo...
WP_004513728   3 QILNTLYVMTQGAYVCLDHETVKVEVKGALQMQVPLHHLGAIVTMGNVMMSPFIMARCAEDGRALVILDRNGKFKCRVVG 82  Geobacter metal...
WP_011237667   2 QLLNTLYVTTPESYLHLDNDTLRVEVERETRLRVPLHHLGGVVCMGNVMLSTPLMHRLAGDGIGLVLLDGNGRFKARLEG 81  Aromatoleum aro...
WP_011466169   2 QLLNTLYVTTADTYLRLDNDTLRVEVEQETRLRVPLHHLSAVVCFGHTGLSAPLMHRLAEGGIALVLLDDNGRFKARLEG 81  Albidiferax fer...
WP_010959993   3 vLQNTLYVTTPEAYLRLEGETVCVMIEEQKRLQVPLHHLSAFVLFDHVMLSPALLGRCAEDGRSVVWLDRAGRFRARLEG 82  Methylococcus c...
WP_011529383   3 QLLNTLYIQTQGTYLHLDTDNIRVEVERTKKAMLPLHHIEGVVVFGNVLLSPFLIHRLAREHKPVTWLSEHGRFMARTET 82  Deinococcus geo...
WP_011134784  83 PVSGNVLLRRAQYRASDDGPASASLARHLLLGKLHNQRAVLSRALRDHGEGLKNEArseLEQARKRLSRLADKLWHVDDL 162 Chromobacterium...
WP_011478973  83 KQTGNVLLRRTQYRLADDPEKANAIARVMVGAKIANARTVLMREIRNHG---EHAN---ISRAVEQLGYSLKSCQFSQSV 156 Methylobacillus...
WP_011396665  83 RQSGNVLLRREQYRVSDKDTPRLDIARSIVLAKIANSRRVLQREVRN---KGAHPS---LDEAIARLANCLRRCERPDNL 156 Hahella chejuensis
WP_011200158  83 RQSGNVLLRRAQYRISEQNP--IPIARNIIAAKIQSAKRVLQRRLRNHG---EHEE---VQAAVMALNFSLQQLKQAENL 154 Mannheimia succ...
WP_011392030  83 PVSGNVFLRHAQHEALSDSKKTTAIARNIVAGKIRNTRQVVLRGAREADNEDDRKA---LQETARELAHGLDALSRSPDL 159 Moorella thermo...
WP_004513728  83 KTSGNVLLRQTQYEAVRDRERSAAIARNMVAGKVKNARQILMRGARETTDADESAV---LRKAGDTLADALFHLKDATDI 159 Geobacter metal...
WP_011237667  82 PVSGNVLLRRAQHIQSADTDFALQFARSCIAGKIRNARQMLLRGARDARNEEESAR---ITRAAEDLAAALRSVPGSGDA 158 Aromatoleum aro...
WP_011466169  82 AVTGNVLLRQAQFGRVADPAFTLDMARACVAGKIKNTRQVLQRGAREAKSEDEAQV---LTRLADDLAASLRALTEATSL 158 Albidiferax fer...
WP_010959993  83 PVNGNILLRQAQFRAAEDGAQTLGLARAVLAGKLRNSRQLLMRGARETDDVVERDA---LVRAAKLIANQVRKLPLAQDL 159 Methylococcus c...
WP_011529383  83 PMSGNVLLRTAQHACAGNAARTLAIARLIAAGKLQNQKVTLLRAAR-EAEADDAAL---LRQAARDINVQIACLPLTETV 158 Deinococcus geo...
WP_011134784 163 DALRGVEGEAAQNYFAVFPHLLRMD-DPALRFAGRSRRPPRDPVNAVLSFLYTLLTHDCRSALESVGLDPTVGFLHRDRP 241 Chromobacterium...
WP_011478973 157 PQTMGIEGDAAATYFSVFNGLIRGS-R--FQFNGRIRRPATDPVNALLSFIYSLITQECVSALMGVGLDPYVGFLHQDRP 233 Methylobacillus...
WP_011396665 157 DILRGLEGEAAAIYFGVFNQLLKQD---GFDFKGRVRRPPTDPVNALLSFLYTLVAQEISSALQGVGLDPYVGYLHVDRP 233 Hahella chejuensis
WP_011200158 155 DLIRGIEGDAAARYFGVFQHLL-AE-KNGFGFDGRNRRPPRDGVNALLSFLYSILGKDISGALQGVGLDPQVGFLHADRP 232 Mannheimia succ...
WP_011392030 160 EQIRGIEGNAARHYFATLDRMVRVN-REAFKITHRNRRPPLDRMNALLSYIYALLLNDCLSAAEGVGLDPQIGYLHVLRS 238 Moorella thermo...
WP_004513728 160 DHVRGLEGEAANAYFQVFDRMVKEEeRPAFRMNGRNRRPPLDPMNALLSFLYTLLLNDCISAVEGVGLDSQMGFLHVLRP 239 Geobacter metal...
WP_011237667 159 DILRGVEGEAARQYFAALNLLVREDaRPVFQMDGRSRRPPRDRMNALLSFLYSMLMNDCRSAVEAAGLDPQVGFLHVLRP 238 Aromatoleum aro...
WP_011466169 159 DVLRGIEGEAARQYFIGLNLLVRPEsRAVFQMDGRTRRPPRDRFNAMLSFLYSMWMNDCRSALEAAGLDPQVGFLHALRP 238 Albidiferax fer...
WP_010959993 160 DTLRGLEGDVARLYFEALPKVMRAKaRAEFPFDCRNRRPPRDRFNALLSFLYALVLSDCRAALETVGLDPQLGFLHAVRP 239 Methylococcus c...
WP_011529383 159 DEVRGTEGTAARLYWEVFPLMLRQN-RDFFWLSERHRRPARDPINALLNFVYTVLANDCASACQAVGLDPQLGFLHALRP 237 Deinococcus geo...
WP_011134784 242 GRPSLALDLVEEFRPVLADRLALSLFNRRQLAAKDFRGQDNGGVLLSDEARKTVLVAYQERKRDSLLHAYLDEKVELGLF 321 Chromobacterium...
WP_011478973 234 GRPSLALDLLEEFRASWADRFVLTLLNRRQLSPQAFVTEASGAVRLTDDTRKQVLVAFQERKQEEVVHPYLQEKVPYGLL 313 Methylobacillus...
WP_011396665 234 GRVGLALDILEEFRAWWCDRLVLTLINRKEVKASDFDIEASGAVRLKEDARRKVLVAYQEKKQEEISHPFLNEKVQVGLL 313 Hahella chejuensis
WP_011200158 233 GRDSLAQDLLEEFRAWWVDRMVLSLINRGQIKPQDFVTEDGGAVNMKPEARKLLFQSLQAKKQEKIVHPFLQEEVEIGLL 312 Mannheimia succ...
WP_011392030 239 GRPALALDLMEEFRAILADRLALTLVNRRQIDERDFVERPGGAVHINDNARKEIAIAYQKRKQEEVLHPVLNRKVPLGLV 318 Moorella thermo...
WP_004513728 240 GRPSLGLDIMEEFRAVLADRLALTLINRKQITEKHFEVRPGGATYLDDAGRKEVIMAYQKRKQDEFHHPVLDQKVPFGLL 319 Geobacter metal...
WP_011237667 239 GRAALALDLMEEFRP-FADRLALTLINRGQIAGDDFVERAGGAVLLEGDARKAVVVAWQERKQEELTHPLLAQAIPLGVV 317 Aromatoleum aro...
WP_011466169 239 GRAALALDLMEEFRP-WADRLALTLINRGQLTADDFVLREGGGVLLEPDARKAVVVAYQERKRDEINHPLLAQSVPLGLV 317 Albidiferax fer...
WP_010959993 240 GRPALALDLLEEFRAPLADRLALTLVNRGQLQASDFDEREGGAVLLNDKGRKTVIAAYQTRKQEAITHPLLKQTLPIGLL 319 Methylococcus c...
WP_011529383 238 GRSSLALDLMEELRPVIADRAILTLINRQQLTPRDFVLHEGGTVSITEEGRKTILAHLAERRREEVMHPLTARKTPLGLL 317 Deinococcus geo...
WP_011134784 322 PAIQAQLLARHLRGDLDAYPPFLW 345 Chromobacterium violaceum
WP_011478973 314 PHCQALLLARHLRGDMEFYTPYLi 337 Methylobacillus flagellatus
WP_011396665 314 PHCQALLLARHLRGDLQHYPPFSt 337 Hahella chejuensis
WP_011200158 313 PYIQAMLLARHLRGDLAEYPPFLM 336 Mannheimia succiniciproducens
WP_011392030 319 PHIQARLLARVLRGDAEEYLPFMY 342 Moorella thermoacetica
WP_004513728 320 PHVQARLLARHLRGDLEQYTPVLY 343 Geobacter metallireducens
WP_011237667 318 PLVQARLMARTVRGEMDTYLPFLV 341 Aromatoleum aromaticum
WP_011466169 318 PLVQARLMARALRDDGAPYVPFVa 341 Albidiferax ferrireducens
WP_010959993 320 PHWQARLLARYLRQDVAHYVPYLH 343 Methylococcus capsulatus
WP_011529383 318 SHVQARLLAQHLRGDRPHYPPYLH 341 Deinococcus geothermalis
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