Conserved Protein Domain Family
FH_FOXD1_D2-like

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cd20046: FH_FOXD1_D2-like 
Forkhead (FH) domain found in Forkhead box proteins FOXD1, FOXD2 and similar proteins
FOXD1, also called Forkhead-related protein FKHL8, or Forkhead-related transcription factor 4 (FREAC-4), is involved in transcriptional activation of Placental Growth Factor (PGF) and the complement component (C3) genes. It plays an important role in early embryonic development and organogenesis, and functions as an oncogene in several cancers. FOXD2, also called Forkhead-related protein FKHL17, or Forkhead-related transcription factor 9 (FREAC-9), is a probable transcription factor involved in embryogenesis and somatogenesis. It has been found that long noncoding RNA FOXD2 adjacent opposite strand RNA1 (lncRNA FOXD2-AS1) expression is upregulated in various human malignancies, including gastric, lung, bladder, colorectal, nasopharyngeal, esophageal, hepatocellular, thyroid and skin cancer. It is a promising candidate as a new biomarker and therapeutic target for cancer diagnosis/prognostication due to high tissue specificity and elevated efficiency. The FH domain is a winged helix DNA-binding domain. FOX transcription factors recognize the core sequence 5'-(A/C)AA(C/T)A-3'.
Statistics
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PSSM-Id: 410820
Aligned: 8 rows
Threshold Bit Score: 207.243
Created: 18-Dec-2018
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
DNA binding
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based structure evidence that Rattus norvegicus FOXD3 (2HDC) binds DNA through its Forkhead domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ######                ##                 ## ### ###  #     ###### # ######     
Q16676       125 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 204 human
Q98937       143 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 222 chicken
O60548       127 KPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 206 human
Q9PSY4        68 KPPYSYIALITMSILQSPKKRLTLSEICDFISSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 147 African clawed ...
Q90WN4        78 KPPYSYIALITMSILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 157 African clawed ...
XP_007897990  78 KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 157 elephant shark
AAH67138      74 KPPYSYIALITMAILQSPKKRLTLSEICDFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 153 zebrafish
XP_005998825  74 KPPYSYIALITMAILQSPKKRLTLSEICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPe 153 coelacanth
Feature 1                   #####   
Q16676       205 sadMFDNGSFLRRRKRFKR 223 human
Q98937       223 sadMFDNGSFLRRRKRFKR 241 chicken
O60548       207 sadMFDNGSFLRRRKRFKR 225 human
Q9PSY4       148 sadMFDNGSFLRRRKRFKR 166 African clawed frog
Q90WN4       158 sadMFDNGSFLRRRKRFKR 176 African clawed frog
XP_007897990 158 sadMFDNGSFLRRRKRFKR 176 elephant shark
AAH67138     154 sadMFDNGSFLRRRKRFKR 172 zebrafish
XP_005998825 154 sadMFDNGSFLRRRKRFKR 172 coelacanth

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