Conserved Protein Domain Family
GRP

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cd23110: GRP 
glucose/ribose porter family
The glucose/ribose porter (GRP) family (TC 2.A.7.5) includes two functionally characterized members, a glucose uptake permease from Staphylococcus xylosus, and a probable ribose uptake permease from Lactobacillus sakei. Both proteins probably function by H(+) symport. This family also includes several putative and hypothetical membrane proteins that are probably involved in sugar transport across bacterial membranes. GRP family proteins have a distinctive topology: 10 putative transmembrane (TM) alpha-helical spanning domains per polypeptide chain, which apparently arose by intragenic duplication of an element encoding a primordial five-TM polypeptide. In Lactococcus lactis, GlcU was identified as the sole non-PTS (phosphoenolpyruvate:phosphotransferase systems) permease involved in the transport of glucose, which is driven by the proton-motive force. A gene from Bacillus subtilis, ycxE, that is homologous to glcU, could substitute for glcU in Escherichia coli glucose growth experiments and restored glucose repression in Staphylococcus xylosus glcU mutants. RbsU is encoded on the rbsUDK gene cluster, which encodes proteins involved in ribose uptake and phosphorylation. RbsR has been annotated as the repressor of the rbsUDK operon, based on its homology with RbsR repressors. The GRP family belongs to the Drug/Metabolite Transporter (DMT) superfamily (TC 2.A.7).
Statistics
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PSSM-Id: 438513
Aligned: 248 rows
Threshold Bit Score: 125.262
Created: 11-May-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
  next features
Feature 1:putative TM1 [structural motif]
Evidence:
  • Comment:GRP family proteins contain 10 putative transmembrane (TM) alpha-helical spanning domains per polypeptide chain.
  • Comment:based on prediction by TMHMM

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##################                                                              
Q88RZ3         7 LIGLGPLLGWGLYPTIASki-gGRPVNQILGSTIGTLIFALIYAWVqgiaf-----psgmNLWFSILSGIGWASAQIVTF 80  Lactobacillus p...
WP_146526626   7 IYAIITVMAWGSWLVPSQnvkfPNEQAKTFFVALCTTVVTVIIVLArgelg----qlssaGSWIPVVGGLIWSVSAYCAF 82  Novipirellula a...
WP_102177309   5 TTALVTIICWGTWVGLSQtvhfANNYVKTFYITLGNLMLAILVVFIqqefhqinmylireVFLFPFLGGVIWAIGSFFAF 84  Fischerella the...
WP_033362810   5 LCAVVTVLAWGSWIGLAQyageADAHLKTVYVTAGGLAFALIAPAVlgrpgagdlrftlaAWWIPFLGGVIWALGNVCAL 84  Dactylosporangi...
OGD93149      13 IFAFLTILLFGSWAVPTKtl-kIDPQVQAFWLTIGHFLLSAVIFIFfaap------ltlnQSILPLSAGILWGLGIISGY 85  Candidatus Curt...
WP_012373489   5 LAALVTVLAWGTWLAPSQnvplRRQEIRTFYVATANLIVALAVALWrgswe-----ldagAFWWPFAGGLVWAVSGLCAF 79  Opitutus terrae
VGO19578       7 VYAVVTVFAWGTWLAPSQnvpfKGQQVRTFYVTLAVMLLALIASAFvgmeg-----lnssTFWFPVLGGLIWALSGWSAF 81  Pontiella sulfa...
WP_028975368   5 VAIIVTAIAWGIWVPLTHkvkfPSSYTRVFYVAIANLILAFFVARFspywa----eltprVMIFSFIGGIIWAISGACAF 80  Spirochaeta cel...
WP_152572187   4 VYALVAILAWGTWIAPSQnveiEGQQTRTFYVTIAVFVLSLIASLFvgfdg-----lnatTFWYPFAGGLIWAISGWSAF 78  Jejuia pallidil...
SDU79986       6 LLAAALVLAFGTWIPLAQlrpgVPDRTRLVHVAVGNAAFAGVAFLIaggsgl---sfgwrGFWLPLLGGVVWAAGNYCVF 82  Microlunatus sa...
Feature 1                                                                                        
Q88RZ3        81 KVFTMVGSSRAMPITTAFQLLGASlWGVFALGDWPGamd--kvlGGLALVGIIIGAWLTVWSEHkdagna-------rtl 151 Lactobacillus p...
WP_146526626  83 VACNHIGIAKAFGIWAPLNIIVSFiWSLTLFGQFRDsslligllALQSVALVTVGILMILFSGGdetdkt------gkst 156 Novipirellula a...
WP_102177309  85 VGTGNIGIARASGIWTPLNIFMGFlWGIVIFNERFNtnvylialLCLSLVLILSGILMIVFAKGfgksiss-----rkvf 159 Fischerella the...
WP_033362810  85 SAAGRLGIARAAAVWTSLNIALAVvWGAALFGEFSRlgparlalNAVVLLGVIGGLVLVTMAKDdgevr--------awa 156 Dactylosporangi...
OGD93149      86 VGIRNLGITRALGTWMPTVIIVSAlWGLIFFGQAFTlgpwkltlTILGIVLLVIAAISVIFSGKdegki--------knl 157 Candidatus Curt...
WP_012373489  80 TATANLGIAKAFGIWAPLNIVVSLvAGRVIFGEFAHpsrtqltvLVLAVLLIVAGVVLIVAAKPgaeqqsg-----trsv 154 Opitutus terrae
VGO19578      82 VGASRMGMAKAFGIWAPMNIVVAIvWGAVLFGEFMSmefsvlatAVISLLVIIGGILLIVFAGSgdesak------nkgg 155 Pontiella sulfa...
WP_028975368  81 YASERIGIAKANGTWAPLNIVFSItWGILLFGEFLDlptpikllALLAVIIIIAGILMIITASGgkatks-------mns 153 Spirochaeta cel...
WP_152572187  79 VGTNNLGMAKAFGIWAPMNIVVSVlWGALLFGEFSNvapnalllGIFAFVIILAGILLIIFAGGgddeadk-----gksk 153 Jejuia pallidil...
SDU79986      83 RASATIGLARAAGTWTPLNIVVAFaWGALLFGELDGftpdrlalLGLAFVAVVVGVLLISGSQArtagatgpgarttrlr 162 Microlunatus sa...
Feature 1                                                                                        
Q88RZ3       152 rqAVIWLAVGEIGYWAYSAAPQATn---------IGGEEAFVPQAIGMVIVSIVYalflasrgeklalVEGVSYTHIISG 222 Lactobacillus p...
WP_146526626 157 tlGLLGAVGAGILWGTYYIPSAYLsrtie-gaseVSAWASVLPLAVGMLIGTSVMvaitrk--apkleSRLDYFRALSSG 233 Novipirellula a...
WP_102177309 160 vlGLLGSIGAGVLWGSYFIPIKISg---------VSMWIANLPFALGMFLGGIVLlmiggv--klllkNKKDYLVGLSAG 228 Fischerella the...
WP_033362810 157 sgGLAAAVGAGVLWGSYFVPVQASg---------VSPWVANIPLAAGMVVGSVALlltpgrphrlrpaHRRAYAVLPAAG 227 Dactylosporangi...
OGD93149     158 kfGVLASLTLGLFHGSFFVPLRASp---------LSIYTTFLPLTVGMVLTTFIIvsykk---lkivhGPIEIGRMILAG 225 Candidatus Curt...
WP_012373489 155 prGLLGALGAGVLWGLYFVPVELAg---------VSPWAGALPLAIGIFAGSTVLllltrh--gprlaAAQDYLRVTGTG 223 Opitutus terrae
VGO19578     156 vlGLLGAMGAGVGFATFFIPIQIGtan----npdFNMWIGTLPLSIGMFAGACVLmlitks--spkleKGSDYLRVMSSG 229 Pontiella sulfa...
WP_028975368 154 flPYLAAIGTGVLWGTYFIPIRLTq---------ASTWAAAFPLGIGILVGSLIFviisrs--slkleKTKDYAITMTSG 222 Spirochaeta cel...
WP_152572187 154 llGLLGAMGAGVGFATYFVPITWGsktaseafdgFNMWIGTLPLAIGMFVGSSMLmlisks--spklnKGSDYMRVLSTG 231 Jejuia pallidil...
SDU79986     163 spGLLWAVAAGVLWGSYFIPAQWAa---------TSAQASNLPLALGILVGALVLaltar---apvrlAPRVAATQVGAG 230 Microlunatus sa...
Feature 1                                                                              
Q88RZ3       223 FFFAFAALTYLISAQpnMNGLATGFILSQTSVVLATLTGIWFLGQKKTTKe-mWVTIGGLILIIAAAAVT 291 Lactobacillus plantarum W...
WP_146526626 234 GLWALGNFGMLLTVN--AIGPGPGYTIASLCVVVNALWGVFYFKDPAPKTraaLLTIIGVLIATLAGLVL 301 Novipirellula artificiosorum
WP_102177309 229 CLWGIGNFGMLHLSQ--QIGTAKGFTISQLSLLVNALIGLYLFKDPKPKTlaaQLTLAGVLLAGIGGVIL 296 Fischerella thermalis
WP_033362810 228 ALWGVGNVAMLLLVQ--DVGAGRGFTVAQLGLVVNALVGIYLYNEPKPGTraaRITLCGVALATAAGVLF 295 Dactylosporangium auranti...
OGD93149     226 LILGAGNYTALLTTQ--YLGVAQGYPLTQAGIIVNTLWGVLVFKEATTKKg-kVLIAIGVALAILGAVVL 292 Candidatus Curtissbacteri...
WP_012373489 224 VLWSVGNFGMLMLVD--AWGAGRGYTVSQLSLVVNALVGIYWLKEPAPRTrgaLLTLGGCALATIGGVVI 291 Opitutus terrae
VGO19578     230 VLWGLGNYGALAMME--VIGTGKGFTIAQLCVVVNALVGVFVMKEPDPKSkaaKQTLLGVLIAVVGAVVL 297 Pontiella sulfatireligans
WP_028975368 223 LLWGIGNYSSLILME--RIGTGKGYTIAQISLVINALISIFIFHQPSPKTkeaLKTVIGILVALAGAIIL 290 Spirochaeta cellobiosiphila
WP_152572187 232 VLWGIGNYGALALVD--MIGAGKGFTIAQLCVVVNALVGVYILKEPDPKSraaKLTLLGVVIAVIGGVIL 299 Jejuia pallidilutea
SDU79986     231 VVFGVGNLLLLALVA--RVGTGTGFTIAQLSLAVNAAIGIWVFRVPRPGTsqaRRVLAGIAVAGVGGAVI 298 Microlunatus sagamiharensis

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