5XTB,6GCS,5LNK,6G2J,5LC5,5LDX


Conserved Protein Domain Family
Complex1_LYR_NDUFA6_LYRM6

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cd20266: Complex1_LYR_NDUFA6_LYRM6 
LYR (leucine-tyrosine-arginine) motif found in NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (NDUFA6) and similar proteins
NDUFA6, also called LYR motif-containing protein 6 (LYRM6), or Complex I-B14 (CI-B14), or NADH-ubiquinone oxidoreductase B14 subunit, is an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), and is believed to be not involved in catalysis. In general, accessory subunits are integral for assembly and function of Complex I, which functions in the transfer of electrons from NADH to the respiratory chain. NDUFA6 belongs to the Complex1_LYR-like superfamily that consists of proteins of diverse functions that are exclusively found in eukaryotes and contain the conserved tripeptide 'LYR' close to the N-terminus.
Statistics
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PSSM-Id: 380761
Aligned: 59 rows
Threshold Bit Score: 74.5216
Created: 4-Apr-2019
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:5XTB; Homo sapiens NDUFA6 forms a Mitochondrial Respiratory Megacomplex I2III2IV2 with other NADH dehydrogenase [ubiquinone] subcomplex subunits, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #      #  #   #                         #  ##  ## #        #  ##                
5XTB_E        10 MNEAKRRVRELYRAWYREVPNTVHQFQL--DITVKMGRDKVREMFMKNAHVt---DPRVVDLLVIKGKIELEETIKVWKQ 84  human
EFJ27745      15 LPEAQERVLELYRRSVRSVPFIVECFNIegVATPAQLRSRIMKEFRKKTDIt---NPRALDLLVVKGLEELMMFLTQTKQ 91  Selaginella moe...
XP_005650616  24 VGPVEAKIKDFYREVSRLLPWTMKNYNLdeITTLSELRKNVSLLFRQNEHIt---DPKVVNILIYKGREELESVALQHKQ 100 Coccomyxa subel...
GBF92851      14 EGLFGGEARKFYYEVCRCVPFIQRAMKLeeVVSVRDMRSVVKEKFKQYKDVk---DQRVIDLLIFKGRQELETYLTLHKN 90  Raphidocelis su...
PRW39378      23 PEVKHQAAKQFFKEVCRCLPWVVDNYRLdeLTTVPELRRNLAGMFRKFTDVq---SPEVIDLLIYKGREELEMILMQHKQ 99  Chlorella sorok...
XP_003062486  20 LAEAKARARQFYRELCREVPWVMRTYWLeeVTTPAKFRAQLANEFRRRVLYtgphTTPVIDVMLFKANQEMVTVAAHHFQ 99  Micromonas pusi...
RHW69452     187 NWEIKAAMMSLYRSCLKGLPMVKHYYWL--LTPLPEMKSKIRERFLQNQHTk---DPDAIRHLLHNGWMEYQEVILFRRT 261 Trypanosoma bru...
CUI14118     261 NWDLHTAKFSLYRACIKSIPLAKHFYYL--MNPIDQLKSQIRLRFLQNRHVk---DPDAIRHLIHSGWTEYQEVVMGRRT 335 Bodo saltans
RZB81812      18 MEEARHRVFEFFRTACRSLPSVMEIYNLydVVSVSELRSSVASQIRNNIHVt---DPKLTLPGGIRLFIVVVCEWISGYL 94  Glycine soja
XP_026327095  21 NCEAHTRVLGLYRAFYRIIPFIQEYYYM--PKSEKDIKTMIRSYFYANSHVe---DVRVIDLLILKGWIEYTEVDQTWQQ 95  Hyposmocoma kah...

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