2X7X


Conserved Protein Domain Family
PBP1_sensor_kinase-like

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cd06308: PBP1_sensor_kinase-like 
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periplasmic binding domain of two-component sensor kinase signaling systems
Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Statistics
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PSSM-Id: 380531
Aligned: 73 rows
Threshold Bit Score: 232.822
Created: 25-Jan-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:2X7X; Bacteroides thetaiotaomicron periplasmic-binding protein of hybrid two component system binds fructose, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  # ##                                                                  
2X7X_A      8 RIGVAQCSd-DSWRHKMNDEILREAmfynGVSVEIRSagddnSKQAEDVHYFMDeGVDLLIISaneaaPMTPIVEEAYQk 86  Bacteroides thetai...
CNF68733   35 TIGVANFSlqAPYFIAMSKAIETEAetygNIKVITTDaqgdaAKLTTNVNDLLTqKVDGVIISgg-plNAAPAAMNAIKq 113 Mycobacterium tube...
KPJ62179   46 VIGHSMASlrAEWWQIMHQSILELAeqhsEVKLIWTDsegknEKQLADVNDLLLqGIDLLLLFpnesaPLEAAIDAANRk 125 Deltaproteobacteri...
OGO11750   37 TIGVANFSqcCPYFIGMNDSVIAEAsaysNITVVSTNadgdaAKFQSDIEDLIAqGIDGIIISga-wlEQAPAALDALTe 115 Chloroflexi bacter...
OGP78495   37 TIGWSNASlgNPWRIAMVEMVKEEAkkypSVNLLITNaedkaAKQISDSEDLLAkGVDLLMLSpttlhGVNPVVDKAAEk 116 Deltaproteobacteri...
OHD80470   42 LIGISQPFmgHPIRQAGTVLINAWLkdhpEVTVMVTDgqlnaAKQIADIEDMITkKVDIILVAahqspTLVRVLREAKDa 121 Spirochaetes bacte...
SDZ42631   41 KIGWSVAYfdHPVYQLMMKGAKEEAak-lGVEVIFADgkndpAVQTQQLNNFLAqKLDGIILTpavsdPMIPAIKKVNQa 119 Micromonospora pat...
OHV72695   35 TIGWSVAYfdHPVYQLMMKGAEKVAde-aGCKVIFADgkddpSVQASHIDNFIAqGVDGIILTptvsdPLIPAVKKVNDa 113 Ensifer sp. LCM 4579
OIQ61587   51 VVGWSMAYfdHPVYQLLMNAARELAek-qGIKLIFADgkndpAVQASQIDNFIAqKVDAIILTptvadPLIPAVKKVNQa 129 Moorella thermoace...
PIE34789   31 LLGFSHVAmnCPYYLAMDKAAKDTAaa-rGADIIVFNaeediSKQISDINSLLVkGIKGLIVNstteyGTMPVIKRAASm 109 candidate division...
Feature 1             #                                                             #         
2X7X_A     87 -GIPVILVDrkils----dkytaYIGADNYEIGRSVGNYIAssl-----kgkGNIVELTGLSGst-pAMERHQGFMAAis 155 Bacteroides thetai...
CNF68733  114 kDVPSVLVDrkfsg----gqytsWIGPNNTQIGQGDGRYIAdrl-----kgsGTLVVIKGGPAdntiGLDRTNGLLGVvk 184 Mycobacterium tube...
KPJ62179  126 -NVPVIVWDkpmreg---cgylaFVAGDHYGIGQSDAKYLVklltekygeprGKVIEISGEEGtm-tVTQRRGGFDDYla 200 Deltaproteobacteri...
OGO11750  116 aGIPSVLVDrqfgvg--getytsYVGPQNFVIGQQDGQYIAdrl-----ggeGVVVQLRGGPAdnsiGLNRSNGVLSVle 188 Chloroflexi bacter...
OGP78495  117 -KVPLVVVQretsn----knytvLVWNDDVALGTSAFIEMAril-----gmeGKVAVVEGIAGas-sSLGRTQGIKSAaa 185 Deltaproteobacteri...
OHD80470  122 -GIPIIAFDrtltdp---svqvgMVVNDDYAAGASAAKLLAekl-----ggkGNVVSLQGPAGnt-tVTLRQGGFLSKls 191 Spirochaetes bacte...
SDZ42631  120 -KVPFAVVDrrmetkgsgikwdfLVSWDMVKSGTVGGEQIVkal-----ngkGKIAVVEGTAGag-sTVDRGGAFYKVia 192 Micromonospora pat...
OHV72695  114 -GIPLVMADrrmqthgqpikweaLVSWDMVKSGTIGGEQTVqai-----ggkGNIVVVEGTPGag-sTIDRGNAFYEVie 186 Ensifer sp. LCM 4579
OIQ61587  130 -KIPLVIVDrrmfthgqdikwdaLVSWDMVKSGTLGGEQVVeal-----ngkGNLVVVEGTPGag-sTIDRGNAFYEVin 202 Moorella thermoace...
PIE34789  110 -GIPVVAIDrnlyg-----dylaYVGIDQWKAGELQGEYITkell----pdgGNIVLIIGDPGcp-aSIGRGNGMKNVle 178 candidate division...
Feature 1                      #                           # #                       #        
2X7X_A    156 kfp---diklIDKADAAWerGPAEIEMDSMLRrhp--kiDAVYAHNDRIAPGAYQAAKMAgrekeMIFVGIDALpgkgng 230 Bacteroides thetai...
CNF68733  185 esp--gikvvTAPDFGEWssDGGLKAMENVLAknk--eiDAVFCENDSMCLGAQKAISDAgradeMFLVGADGQkeala- 259 Mycobacterium tube...
KPJ62179  201 kyp---nieiVAQDTAAWyqDKAYYLTKNFLLahp--dvDAFYYHNDNMALGGVKALKEEgligkVWIFGVDGDyrflk- 274 Deltaproteobacteri...
OGO11750  189 tys--gitvvTAPDFGGWsaDGAITLMEDLLAgnp--qiDAVFCENDSMCLGAQTAIADAgrsdeMFLVGVDGEtaale- 263 Chloroflexi bacter...
OGP78495  186 nyp---niklVALQPGDYqeAKAITAMENMIQanp--dlNGVISHSGTMARGALKALRNAgkagkVIVVSIGSEnhvlk- 259 Deltaproteobacteri...
OHD80470  192 eyp---giklVDDQVANFqrIQAVDVFENVLQahp--elDGVYCHNDEMALGVVKVLKDAgi-snKIVVGVDGQkdale- 264 Spirochaetes bacte...
SDZ42631  193 anp---gievVYKADGNFtrSGGQQVTEAILQrfpkgqlDAIYYMADEMLFGGIQAIKNAgrrddLKIVSCDGDknald- 268 Micromonospora pat...
OHV72695  187 kyp---dikiLAKIPANFnrAKGQEVTENILQrfkpgeiDAIYYMADEMTFGGLQAIKAAgrlgeFKIISVDGQkeamd- 262 Ensifer sp. LCM 4579
OIQ61587  203 khp---dikvIHKVSGDFkrDKGMQVTENILQrfpkgqiDAIYYMNDEMALGGIQAIKAAgrqgeFKIISVDGEkeamd- 278 Moorella thermoace...
PIE34789  179 mpdnkgkykiLATYKASYnrMLGMEKMEEAIAafs-dqiDLVYCANDSMALGALEALKEAgm-tdIPVAGIDGQkeaya- 255 candidate division...
Feature 1                   #                                           
2X7X_A    231 lelvldSVLDATFIY---PTNGDKVLQLAMDILEKkp---------ypKETVMNTAVV 276 Bacteroides thetaiotaomicron VPI-5482
CNF68733  260 -aiksgSNYAATAVNn-aDTIGRTGLNRMLAILAGak---------paKDTPLEAPLV 306 Mycobacterium tuberculosis
KPJ62179  275 --aikdGEGTATSTYs--YVLGKMALELGIKYLKGek---------ipYHVIMPTYLV 319 Deltaproteobacteria bacterium DG_8
OGO11750  264 --ailnGTNYAATGLnssDQIGRAGFHRLMAILAGatp--------veRDTYLPSPLI 311 Chloroflexi bacterium RBG_13_68_17
OGP78495  260 --eikrGNMHSTVMEp--TRVGVEGFRVGLRLLAGek---------lpKLNPTYAPVV 304 Deltaproteobacteria bacterium RBG_16_49_23
OHD80470  265 --aimaGDLYGTVRK---IVEFPAALDMALEYLKTgk---------taTMNYLEQIPI 308 Spirochaetes bacterium RIFOXYC1_FULL_54_7
SDZ42631  269 -mlrkgEIDYDGIFFp--QDEGVIGTRLMTQLLKGekpdfa-nqehegRKAALEEHEG 322 Micromonospora pattaloongensis
OHV72695  263 -llragEIDYEAIFH---PDDQAVAVRILCDIVNGrtpdla-nqtyegRKMDLVEFEG 315 Ensifer sp. LCM 4579
OIQ61587  279 -alrrgEIDYEVIFH---PDDEAVAVNVVASILRGenpytpenltykgRTMEIASFEG 332 Moorella thermoacetica
PIE34789  256 -eilkgGQYKSTVINn-sSEITETAVNILMDYLETgae-------pkeQNVITGTILV 304 candidate division KSB3 bacterium

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