1JQ5,1KQ3,1TA9,1JQA,4MCA,1JPU,3UHJ


Conserved Protein Domain Family
GlyDH

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cd08170: GlyDH 
Click on image for an interactive view with Cn3D
Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation
Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent; the zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Statistics
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PSSM-Id: 341449
Aligned: 197 rows
Threshold Bit Score: 355.951
Created: 30-Jul-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1JQ5; Bacillus stearothermophilus glycerol dehydrogenase complex with NAD(+) and Zn(2+), contacts at 4.0A
  • Structure:1JQA; Bacillus stearothermophilus glycerol dehydrogenase complex with glycerol and Zn(2+), contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    #                                                
1JQ5_A     10 PAKYVQGKNVITKIANYLEGig--nKTVVIADeivwkiaghTIVNELkkg-niaAEEVVFSGEASrnEVERIANIarkae 86  Geobacillus stearo...
SHH31465    8 PGRYFQGADITDQAGRFLKHlg--kKFFLIADpvvygiageRLNKSLeaenlhlLFPTPFQGECCqtEIQRITSLvrreq 85  Desulfofustis glyc...
EKS69993   13 PGRYTQGPGALSALGSTLAElg-arRAFVLVDgavidrvsaQVTRSIe-----dAHIVTFPGECTaaVIAKLSDDareln 86  Burkholderia sp. SJ98
ODT55093    9 PRRYIQGPGVAASLGEHVGPlg--qRPVLLADpia---lerEGSPLPg------APALVFGGEIThaEIKRQADAarhag 77  Methylobacterium s...
OLL41362    7 PLRYVQGPGAIDRLAEEIAIig-ggPAAVVIDpvardllgeRISSQLp-----dARLMEFGGECTaaEISARAREag--d 78  Labrenzia aggregata
KJS20965    9 PSIYVQGPGALASIPEWVKNltrkpGIAAIVDpfvl-plfdQVKADMkkaggseMVLHAFSGECThsEINRLVAKigvde 87  Hoeflea sp. BRH_c9
EKS41647    9 PHRYVQGPGALNELSALVPLyg--rRPLVVADvavmgvlreQLETLLqpc-tdsIEFAEFSGECSatQIDAMAGKagaas 85  Afipia broomeae
AIT82100    8 PAHYVQGPGAIDALGTLVRPhg--rRPAVVCDgtvrellgeRIDAALras-gvdVCNLDFAGEVTpgAVDAMARHarrag 84  Novosphingobium pe...
SHO66521   17 PGRYVQGPGALAGIGRLFADlg-yrRPLALADgvvkdkvwpAASAALaea-giaPALADFPGECTraVIAALSEAaraeg 94  Pseudoxanthobacter...
EEY78197    8 PGEYIQGEHALRNISDIATRhq-fkKIGIIYDpaiegpildKVTISLnqs-nldFISYKFPGECTyeTIERLSHImeqhd 85  Acinetobacter calc...
Feature 1             ###  #  #              ## #                  ##                #       #
1JQ5_A     87 aAIVIGVGGGKTLDTAKAVAdeldaYIVIVPTAASTDAPTSALSVIYSddGVFESYRFykknPDLVLVDTKIIAnaPPRL 166 Geobacillus stearo...
SHH31465   86 aDVIIGMGGGKAADTAKMVNiattlPVVIIPTVASTDAPTSQLAVVYDeqHVKAGVFFmsrgPDLVLVDTAIIAraPIRT 165 Desulfofustis glyc...
EKS69993   87 aDAVVAIGGGKTIDSAKGVAralnvPIVIAPSAASSDAPTSRLIILYDdaHRVAGIDMlprnPDAVIVDTALIAaaPARL 166 Burkholderia sp. SJ98
ODT55093   78 aDVIVAMGGGKAIDTGKGVArrlgvPLAVVPTVASNDAPTSRLIVIYDekHAIAEVEFlpsnPDIVVVDTAIVAraPRRL 157 Methylobacterium s...
OLL41362   79 aRLLVGIGGGKAIDTAKGAAierglPVAIVPTIASNDSPTSHIAVVYTpdHAVEGVRHmktnPSLVLVDTAVIAgaPRRF 158 Labrenzia aggregata
KJS20965   88 cGVVIGAGGGKALDTAKAVAsaldvPLVIVPTVASSDAPTSRIAAIYDenHKIVAVPRmrrnPDAVIVDTSIILsaPRRF 167 Hoeflea sp. BRH_c9
EKS41647   86 tDVVVAIGGGKAIDTAKGVRiqrggGIIVVPTVASNDAPTSRLAIVYTddHVLKEVRLmptnPDAVVVDTSIIAraPRRF 165 Afipia broomeae
AIT82100   85 cDCVIGIGGGKSIDAGKCVAvrlsaPFLSVPTAASTDAPASLGAAVYNeaHVRTGSERlkrhPELVLVDTAVIAsaPARL 164 Novosphingobium pe...
SHO66521   95 iDSVVVFGGGKAIDSAKGVAraldlPIVICPTVASSDAPTSRLIVLYDetHRLVGVDFtrrnPDAVVVDTAIIAkaPARL 174 Pseudoxanthobacter...
EEY78197   86 iDSIIALGGGKAIDTTKGISkklniPIIICPTVASSDAPTSRLIIVYDenHKVQGVEKtkrnPDIVLVDLDTIVqaPARF 165 Acinetobacter calc...
Feature 1           #   #                                                                     
1JQ5_A    167 LASGIADALATWVEARSVIKSggktmaggiptiAAEAIAEKCEQTLFKYGKLAYESVKAkvvtpALEAVVEANTLLSGLG 246 Geobacillus stearo...
SHH31465  166 FRAGIGDALSTSFEAEACHASqaknifgvrptrAALELARLSFHILKANAMEALAAVSAqtvtdELETVVEATILLSGLG 245 Desulfofustis glyc...
EKS69993  167 FAAGIGDALSKKYEAAQCQRAdglnsygtpplpGALLLTRATLAILLEDGARAYADIRRgeltdAVERVIEATVLLSGVG 246 Burkholderia sp. SJ98
ODT55093  158 LAAGIGDALSKTFEANACFAAqgrnfygatpprAALALADACYATIRRHGEAALAAVDRqtpdaALEDVVEACVLMSGLG 237 Methylobacterium s...
OLL41362  159 LAAGIGDAMSKPYELAGALAGgglnffagrpteLTQAIVARASDILLADSEAAMSAEGPn---eAFERVVEATVLLSGLA 235 Labrenzia aggregata
KJS20965  168 FVAGIGDAITKKFEVADAGSAgipnffdgsqtmLASFLANSCYDILRKDTEAALSAIDRgtpnaAFERVIEATVLYSGLA 247 Hoeflea sp. BRH_c9
EKS41647  166 FVAGIGDALSKKFEAEQCFNSggmnfykarpaeLAVSIANQCYQVIRRDAVASLVAVDRkepdaAFENIVEATILLSGLG 245 Afipia broomeae
AIT82100  165 LAAGIGDALSKKFEAQAAAAAgagnyhgyvptrFAMAIADTCYRTLREHGHAAFEDVEAgrtsaALEATVEAIIFMSPVA 244 Novosphingobium pe...
SHO66521  175 FAAGIGDAMSKRFEARQCRAAgglnsfgtqaleTALLLTETVFDRLCARGPAAYAAVRAgtwspDVESVVEATVLVSGVG 254 Pseudoxanthobacter...
EEY78197  166 FAAGIGDAISKMFEVNQCKNAhglnsfstppleTALLLANNTYSNLITWGKMAYEDVKQhhitpSVERVVESTVLLSGLG 245 Acinetobacter calc...
Feature 1              #   #             #                                                    
1JQ5_A    247 FESGGLAAAHAIHNGFTalegeihhltHGEKVAFGTLVQLALeehsqqeieRYIELYLCLDLPVTLEDIKlkda-sredI 325 Geobacillus stearo...
SHH31465  246 FESGGLAAAHSIHGGFTalpam-qkalHGELVAFGVLAQCVLegkndaelqELLWFYRALDLPMTLAELGlsgnvddslV 324 Desulfofustis glyc...
EKS69993  247 FESGGLSLAHALIRGLTaipam-asmmHGELVAFGTLVQLFVedtspeeiePLATLMTATGLPLTLAQLGqhapltsaqQ 325 Burkholderia sp. SJ98
ODT55093  238 FESGGLSLAHSLTRGLTahpal-agalHGELVAYGTMLQIVYegrgaefceDVAGFARDCGLPVSLKDLGienp-gdddY 315 Methylobacterium s...
OLL41362  236 FESGGLSIAHAMVRGLSvtpal-sgllHGEMVALGTLTQLAAgqgseeeirTLAAFFRRINLPTSFAEFGvtg---aaeL 311 Labrenzia aggregata
KJS20965  248 FEGGGLSIAHGMLRGFTafpqt-akslHGELVAYGLLVQLALadqpqsfllDLKQFLSGIGLPTCLADIGlgdl-pevdV 325 Hoeflea sp. BRH_c9
EKS41647  246 FESGGLSIAHSLTRGFSaipsl-ngalHGEQVAFGLLTQLCLeqrsqeflaDMMTFFKTVGLPTSLKDLGfsgd-rqdgI 323 Afipia broomeae
AIT82100  245 FENGGLSFAHSMQTALMqarga-srrmHGEHIAYALLVQLAMesradqeitDLAGFLGPLGLPVSLADLDcpep-sedeL 322 Novosphingobium pe...
SHO66521  255 FESGGLSLAHALIRGLTaipam-agmlHGELVAFSTLVQLCVegqdeaacnAVMDLMAAVDLPMTLAALGqseplteaeK 333 Pseudoxanthobacter...
EEY78197  246 FESGGLSLAHALIRGLTaipel-atnlHGELVAYGTVVQAVLenrkhifiiELINFLKSVDLPTTIAELGyhqeisdsmL 324 Acinetobacter calc...
Feature 1                                         
1JQ5_A    326 LKVAKAATAEGEtihn-afnVTADDVADAIFAADQY 360 Geobacillus stearothermophilus
SHH31465  325 VAVKKICVPGSYiynm-pvaINEETVLHAIKKADRL 359 Desulfofustis glycolicus
EKS69993  326 TLIANATLATRYsrhm-sppLTAARLIEGIARADAY 360 Burkholderia sp. SJ98
ODT55093  316 RTIAGPTLAAPHmkhl-arpATVQSLVEAMRQVEAG 350 Methylobacterium sp. SCN 67-24
OLL41362  312 KHIAEVALTAPYapny-yrkLGVSDLVRAMQLLDEG 346 Labrenzia aggregata
KJS20965  326 ARIAELTFEAPYvaar-rsrISPEGLVAAIARIEAL 360 Hoeflea sp. BRH_c9
EKS41647  324 QTIAQRSIAEAPylrqfvgaVTEQSLVAALDKADRF 359 Afipia broomeae
AIT82100  323 CSIAAITCAEKWahhv-pfpVDEAMIVAAMRRIEKL 357 Novosphingobium pentaromativorans US6-1
SHO66521  334 ALVAEATLATNYsrhm-appLTAEALIRGIEAADAL 368 Pseudoxanthobacter soli DSM 19599
EEY78197  325 ETIIMHTLQNDYsknf-eppLNKENLKQAIIKTNHY 359 Acinetobacter calcoaceticus

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