Conserved Protein Domain Family
dam

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TIGR00571: dam 
DNA adenine methylase (dam)
All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273146
Aligned: 10 rows
Threshold Bit Score: 251.91
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P34720     1 MKPFIKWAGGKNSLLDEIQKRLP-DFVhsqdfCLVEPFVGGGAVSLWALSDLphl-kqLVINDCNADLINVYQVIKNNPD 78  Moraxella bovis
P00475     4 NRAFLKWAGGKYPLLDDIKRHLP-KGE-----CLVEPFVGAGSVFLNTDFSR------YILADINSDLISLYNIVKMRTD 71  Escherichia coli
P44431    15 HRPFLKWAGGKFRLTDEINKAFPnKKN-----CLIEPFVGAGAVFLNSNFER------YILADINPDLINLFNIVKXNVD 83  Haemophilus influen...
P21311     1 MSTILKWAGNKTAIMSELKKHLP-AGP-----RLVEPFAGSCAVMMATDYPS------YLVADINPDLINLYKKIAADCE 68  Escherichia coli
O33844     7 ARPFVKWAGGKRALAPTLFAHMPqTFG-----SYFEPFVGGGALFWHLCACTrvrlhdIYLSDINWPLLCAYAAVRDRVE 81  Treponema pallidum ...
AAA16106   7 IAPFLKWVGGKRQLIPEIKNLLPkGILs---hPYYEPFIGGGALLFELQPKN------ATINDYNEELINVYKVIRDNPH 77  Porphyromonas gingi...
Q58015     3 VKPFLKWAGGKTQILSQIEENLPkELKegnikKYIEPFVGGGAVLFYLLQKYef--kkVIISDINEDLMLCYKVVKNDVD 80  Methanocaldococcus ...
Q01511     1 MKPIVKWSGGKTDELKRFEDYIPsDCS-----TFIEPFAGGAATFFHVGNQFe----nKVLSDVHVELVALYRAIANGKS 71  Paramecium bursaria...
P04392     1 MLGAIAYTGNKQSLLPELKSHFPk-YN-----RFVDLFCGG--LSVSLNVNGp-----VLANDIQEPIIEMYKRLINVSW 67  Enterobacteria phag...
P04393     6 FVPPIKSQGIKTKLVPCIKRIVPkNFNg----VWVEPFMGTGVVAFNVAPKD------ALLCDTNPHLISFYNALKNKDI 75  Escherichia coli
P34720    79 DLIGYIEnLQSHYdkLtdlesKKPYFYHKRDVFNQRTSn----dIEQAGLFIFLNKSAFNGLYRVNKNNQFNVPIGNYK- 153 Moraxella bovis
P00475    72 EYVQAAR-ELFVPetN-----CAEVYYQFREEFNKSQDp-----FRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYK- 139 Escherichia coli
P44431    84 GYIEDCKpIFFADdaN-----TPDYYYAKRRQFNASTEp-----FERSIIFLYLNRFGFNGLCRYNSKNEFNVPFGAYK- 152 Haemophilus influen...
P21311    69 AFISRAR--VLFEiaN-----REVAYYNIRQEFNYSTEit---dFMKAVYFLYLNRHGYRGLCRYNKSGHFNIPYGNYK- 137 Escherichia coli
O33844    82 ELIVRVGqHIACh--------TPTYYRLARRKFAVCEHp-----LEVAALFLYLNRSCYNGLYRVNKAGQFNVPLGRAAp 148 Treponema pallidum ...
AAA16106  78 ELIEDLKkHKn----------TAEYFYEIR-AIDRNPLfinltdierASRIIYLNKTCYNGLYRVNNAGEFNSPFGKYK- 145 Porphyromonas gingi...
Q58015    81 RLIEELSsLRDEFlsLde-ekRKEFYYKVRDDFNKNKNdc--deVKRVAQFIFLNKTCYNGLYRVNKKGEFNVPYGRYK- 156 Methanocaldococcus ...
Q01511    72 QAIYDFMkSHAN---------DEKTYYEVRSWKPEDYVd-------VASRFYYLRKTCFRGMMRYNKNGGFNVPFGRYK- 134 Paramecium bursaria...
P04392    68 DDVLKVIkQ------YklsktSKEEFLKLREDYNKTRDp---------LLLYVLHFHGFSNMIRINDKGNFTTPFGK-Rt 131 Enterobacteria phag...
P04393    76 TGDLVKDfLYREG--EklllsNGEYYYEVRERFNNYKEp---------LDFLFLNRSCFNGMIRFNSKGGFNVPFCKKPn 144 Escherichia coli
P34720   154 ----------KPTf-------------VDKENILNISKKLQ--NTKILSGDFELVLAHLPNNFpcLFYLDPPYRPISDTA 208 Moraxella bovis
P00475   140 ----------KPY--------------FPEAELYHFAEKAQ--NAFFYCESYADSMARADDAS--VVYCDPPYAPLSATA 191 Escherichia coli
P44431   153 ----------THY--------------FPEDELRYFAHKAQ--SAVFLCCDFQKTFEFADKDS--VIYCDPPYAPLQQET 204 Haemophilus influen...
P21311   138 ----------NPY--------------FPEKEIRKFAEKAQ--RATFICASFDETLAMLQVGD--VVYCDPPYD-----G 184 Escherichia coli
O33844   149 aspflnttapTPRstqpaaqvghlairIDEENLRSCARALA--NTTLNCQHFSCI--QPARGD--FVYLDPPYLG---T- 218 Treponema pallidum ...
AAA16106 146 ----------NPNi-------------VNEPVIKAVSKYLNtaKIQIFNGDYQTILKDIPRSS--FVYLDPPYHPISQSA 200 Porphyromonas gingi...
Q58015   157 ----------NPKi-------------FDEQNLKNVSKLLK--NVKILCGDFEIVDEYVDAES--FVYFDPPYKPLNKTS 209 Methanocaldococcus ...
Q01511   135 ----------TYNf-------------EDIINEEYYNILKD---TIILEKSFDYIFETYNDSSn-FVFLDPPYD----S- 182 Paramecium bursaria...
P04392   132 i------------------------nkNSEKQYNHFKQNCDk--IIFSS---LHFKDVKILDGd-FVYVDPPYLITVADY 181 Enterobacteria phag...
P04393   145 rfaq-------------------ayitKISNQVDRISEIISkgNYTFLCQSFEKTIGMVNRDD--VVYCDPPYIGRHVDY 203 Escherichia coli
P34720   209 SFTSYSDNGFDDNEQKRLANFCKKI-DKLGHYFLLSNSdpkntNSSdeFFDELYQDF------KIERIQANRTISANSNG 281 Moraxella bovis
P00475   192 NFTAYHTNSFTLEQQAHLAEIAEGL-VERHIPVLISNH-----DTM--LTREWYQRA------KLHVVKVRRSISSNGGT 257 Escherichia coli
P44431   205 NFTGYAGNEFGLAQQRALADLAKSIqKEKQISILISNH-----DTK--FTREIYNGA------KFKRVKVQRSISQNPEK 271 Haemophilus influen...
P21311   185 TFSGYHTDGFTEDDQYHLASVLEYR-SSEGHPVIVSNS-----DTS--LIRSLYRNF------THHYIKAKRSIGVSAGE 250 Escherichia coli
O33844   219 -FSAYDKTGFDRAAHESLAAFCMHL-DARGVLFMLSNS-----DCP--EVRAWYRPF------RVQQLNAPRCIARSAHA 283 Treponema pallidum ...
AAA16106 201 NFTGYVQGGWDEKDQIRLRNVCNTL-NERGIKFLLSNS-----SSD--FIKEIYSDY------NIYVVQATRAVNSDSSK 266 Porphyromonas gingi...
Q58015   210 SFTSYTKYDFNDDDQIRLAKFYRKL-DKRGAKLMLSNSy----NVD--FFGKLYEGF------NIKKVVAKRMINCKGDK 276 Methanocaldococcus ...
Q01511   183 VFTDYGYCSFGKEEHVRLSNFFKTT-KNKCLMVIGATD----------FIRELYDGYih----tEYEKKYRFKLHSGRVG 247 Paramecium bursaria...
P04392   182 N----KF--WSEDEEKDLLNLLDSL-NDRGIKFGQSNVl---eHHG--KENTLLKEWsk--kyNVKHLNKKYVFNIYHSK 247 Enterobacteria phag...
P04393   204 FNSWGERDERLLFETLSSLNATFITsTWHHNDYRENKYvrdlwSSFriLTKEHFYHVgaseknRSPMVEALITNIAKDII 283 Escherichia coli
P34720   282 R-KKVNEIIVSN 292 Moraxella bovis
P00475   258 R-KKVDELLALY 268 Escherichia coli
P44431   272 R-VKVKELIAIF 282 Haemophilus influenzae Rd KW20
P21311   251 S-KSATEIIAVS 261 Escherichia coli
O33844   284 R-GKRCEVLITN 294 Treponema pallidum subsp. pallidum str. Nichols
AAA16106 267 R-GQVSEFLINN 277 Porphyromonas gingivalis
Q58015   277 RkDGIYELLIMN 288 Methanocaldococcus jannaschii DSM 2661
Q01511   248 DeINTTHLVIKN 259 Paramecium bursaria Chlorella virus NC1A
P04392   248 EkNGTDEVYIFN 259 Enterobacteria phage T4
P04393   284 DhIEKSSGDILV 295 Escherichia coli
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