2XB1,2YYR,3ZPV,2VPE,4UP0


Conserved Protein Domain Family
PHD_PYGO

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cd15551: PHD_PYGO 
Click on image for an interactive view with Cn3D
PHD finger found in PYGO proteins
The family includes Drosophila melanogaster protein pygopus (dPYGO) and its two homologs, PYGO1 and PYGO2. dPYGO is a fundamental Wnt signaling transcriptional component in Drosophila. PYGO1 is essential for the association with Legless (Lgs)/Bcl9 that acts an adaptor between Pygopus (Pygo) and Arm/beta-catenin. dPYGO and PYGO2 function as context-dependent beta-catenin coactivators, and they bind di- and trimethylated lysine 4 of histone H3 (H3K4me2/3). Moreover, PYGO2 acts as a histone methylation reader, and a chromatin remodeler in a testis-specific and Wnt-unrelated manner. It also mediates chromatin regulation and links Wnt signaling and Notch signaling to suppress the luminal/alveolar differentiation competence of mammary stem and basal cells. PYGO2 also plays a new role in rRNA transcription during cancer cell growth. It regulates mammary tumor initiation and heterogeneity in MMTV-Wnt1 mice. All family members contain a plant homeodomain (PHD) finger.
Statistics
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PSSM-Id: 277026
Aligned: 17 rows
Threshold Bit Score: 60.4557
Created: 15-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteH3K4me bindingBCL9 HD1
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #               #   #    #  #                     #  #
2XB1_A          5 PCGaCRSevn---ddQDAILCEaSCQKWFHRECTGMtesaYGLLTte-asAVWACDLC 58   human
3ZPV_A          7 PCGmCHKevn---dnDEAVFCEsGCNFFFHRTCVGLteaaFQMLNke-vfAEWCCDKC 60   fruit fly
XP_002128934  288 TCCnCSNdiq---ptDDAIRCLaSCNKWFHRTCVGLtesaCNFLRse-elALWACDNC 341  Ciona intestinalis
CBY10910      222 KCGkCKSdifpkadiEELVRCF-SCKTWFRRTCVGLselaYKRLVmeqeyVAWSCQSC 278  Oikopleura dioica
XP_003389155   24 QCPiCEDavy--ddsQDSIFCNgPCNTWIHRGCAGLtrpaFTKTKs---sGHFHCPSC 76   Amphimedon queenslandica
XP_003726098   64 PCTrCNNnvk---ygQRGLECD-ECKAWTHNQCAGVdndtYDNLVet--sFSWVCPLC 115  purple urchin
NP_001161263  540 LCKfCKGliv--dinDQGIFCEsGCNFWYHRHCIGMtpiaYELLMne-scAEWVCDNC 594  jewel wasp
EDO37666        8 PCGiCQKevn---ddDDAILCEtGCGRWYHRVCTGLtimaYNLLTae-tsAEWVCNSC 61   starlet sea anemone
XP_003385401   27 PCGiCFEevk---deDEGILCEsGCDKWYHRQCAGMsknaYDLLTre-dsAEWACDTC 80   Amphimedon queenslandica
XP_002110816   46 PCGaCGKevn---dnDDAILCEsGCDVWFHRACTGLsqsaYGYLTse-enAEWICDNC 99   Trichoplax adhaerens

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