1XSF,4KPM,4EMN


Conserved Protein Domain Family
RPF

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cd13925: RPF 
Click on image for an interactive view with Cn3D
core lysozyme-like domain of resuscitation-promoting factor proteins
Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.
Statistics
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PSSM-Id: 381607
Aligned: 28 rows
Threshold Bit Score: 62.012
Created: 22-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
catalyticsugar binding
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1: catalytic residue [active site], 1 residue position
Conserved feature residue pattern:EClick to see conserved feature residue pattern help
Evidence:
  • Comment:active site glutamate shown to be essential for activity

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                    
1XSF_A     29 SIWDAIAGCEAGGNWa-INTGNGYYGGVQFDqGTWe---ANGGlryapradlaTREEQIAVAEVTRLrq-gwGAWPVC 101 Mycobacterium tuberc...
4KPM_A      1 SIWDAIAGCEAGGNWa-INTGNGYYGGVQFDqGTWe---ANGGlryapradlaTREEQIAVAEVTRLrq-gwGAWPVC 73  Mycobacterium tuberc...
ACU69525  299 LNWAGVAQCESGGNPksVGGGGLYFGLYQFSvSTWa---AMGGsglp---snaTPAEQTYRAKLLYVrs-gaGQWPVC 369 Catenulispora acidip...
ADB35502  157 AAWRKVAQCESGGNPraVNPTGKYHGLFQFDrQTWr---SVGGsglp---snaSAAEQLMRAKKLYSqr-gaSPWPSC 227 Kribbella flavida DS...
ADB52978  153 AILDSIAQCESGGDPtaISPDGTYRGKYQFDrQTWa---AYGPagdp---araSEAEQDRRALKLYKar-gtSPWPNC 223 Conexibacter woesei ...
Q8CJX5    382 LNWQGLAACESGGRAd-AVDPSGTYGGLYQFdSATw--hGLGGegrp---edaSAAEQTYRAQKLYVrs-gaDAWPHC 452 Streptomyces coelicolor
KKQ57352  105 AQISFLGQCESGLTAn-RNSGNGFYGAFQFTiGTWn---SMGTgyer--adlaPLEVQVDAVQRLVSrsnifGQFPAC 176 Microgenomates bacte...
Q4A0G5    181 SQWKGVIQRESGGNAnaVNASSGAYGLFQLLgHGE----HAGM----------SVQDQMDKAVEVYNnq-gaGAWVAW 243 Staphylococcus sapro...
Q9CF19    140 SEWAYIITHESNGGIdsVNSSSGAYGAFQLLgHGE----YAGM----------TLAEQIAMASKLPA-----GSWVVY 198 Lactococcus lactis s...
ACV80836  317 VNWDGLAYCESTNNPhaVNNPAGYLSTYGLFqFDLptwaSVGGsgnp---gdaSPEEQLTRAKLLYQsr-glEPWLCG 390 Nakamurella multipar...

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