Conserved Protein Domain Family
Porin_2

?
pfam02530: Porin_2 
Porin subfamily
This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to pfam00267. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of gram negative bacteria.
Statistics
?
PSSM-Id: 308243
Aligned: 16 rows
Threshold Bit Score: 123.055
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q89F13        25 DLPVKAK--AVEYVKICSLYGAGFYYIPGTDTCIKLGGYLRADANLNTnsdfnPNqggvagaRNRLMNYYTFRAREDLNi 102 Bradyrhizobium ...
Q05811        24 DAIVAAEpePVEYVRVCDAYGTGYFYIPGTETCLKIEGYIRFQVNVGD-----NP-------GGDNDSDWDAVTAVRFS- 90  Rhizobium legum...
2_pfamImport   1 DAIVAAEpePMEYVRVCDAFGKGFFYMPGTETCLKFQGYVRFQTDFGR--------------DKAGKSDWDSFTRAQFEv 66 
1_pfamImport   1 DAIVAAEpePLEYVRVCDAFGTGFFYIPGTETCLKFSGYVRFQTNFGR--------------DQSGTSDWNSFTRAQFNv 66 
WP_004683739  24 DAVIEQEpaP---VVVAPTFTWNGAYLGGqig---------------------------ygwGRSTLSDEDTSIRV---- 69  Brucella
Q8YG56        24 DAIVAPEpeAVEYVRVCDAYGAGYFYIPGTEICLRVHGYVRYDVKGGDdv-----------ySGTDRNGWDKGARFALRv 92  Brucella melite...
Q8KJM9        24 DAIVLAEpePVEYVKICDVYGAGYYYIPGTETCLRIGGYVRYDIGLGDvvsydKArtt-dvkTGEAQGIWQNHTRFTFKt 102 Mesorhizobium loti
Q985A4        24 DAVVVAEpePAEYVKICDVYGAGYFYIPGTETCLRIGGYLRYDIGVGDsgtfdGVnnvadhkDGGTNDTWYKNMRFTLRt 103 Mesorhizobium loti
Q8KJF5        24 DAITVAEpePAEYVKICDVYGAGYFYIPGTETCLRIGGYVRWDASAGQegsfnERrav-dheDGSINDTWHKKARLSLRt 102 Mesorhizobium loti
P55448        26 DAIVAAEpePMDYVRVCDAFGIGYFYIPGTETCLKINGYARFQVSFGP-----DEvnkrqgwGAQGTSDWDAFSRAYIAf 100 Sinorhizobium f...
Q89F13       103 DTRTATEYGVVRTFFDGVFTWTTGNYTPtgsatggtqysgtlglnaagtglvgsngsgsvngtdgntsagaLGVYYAFIQ 182 Bradyrhizobium ...
Q05811        91 SRKSDTEYGPLTGVIVMQFNADNASDQD-------------------------------------------AILDSAYLD 127 Rhizobium legum...
2_pfamImport  67 DTRTDTELGVLRGFIGFQGNADSGSAAAsttsgs-------------------------------sdkgsaVFVDQAFIE 115
1_pfamImport  67 DTRTDTELGALRGFIEFRADAGNGQSSSsgl-----------------------------------------eaRQAFIE 105
WP_004683739  70 ---KPDGF------------------------------------------------------------------------ 74  Brucella
Q8YG56        93 STGSETELGTLKTFTELRFNYAANNSGVdgkygn--------------------------------etssgTVMEFAYIQ 140 Brucella melite...
Q8KJM9       103 WTGQESELGTLQTYIETRMNYG-KHTAYsgsdspr-----------------------------yyafsqgITLTFAWVQ 152 Mesorhizobium loti
Q985A4       104 YTGQETELGTLKTFTETRWQFGNKSGDYdgsastd-----------------------------wqgvnkgTTLNFAWIQ 154 Mesorhizobium loti
Q8KJF5       103 WTGQETELGTLKTYTETKFNYSdgs--------------------------------------------nsSSLNFAWIQ 138 Mesorhizobium loti
P55448       101 SAKSDTELGTLTGFFASEFNADNDSDVGds----------------------------------------lINLDEAYIQ 140 Sinorhizobium f...
Q89F13       183 FAGFTMGKAVSQFDApWTNYPGNITDNlvggsgTVTGVTQFTYTADFGQgITASFSAEDATQYYQagnlnmtgataagmi 262 Bradyrhizobium ...
Q05811       128 VAGFRAGLFYSWWDD-GLSGETDDIGS------VVTLHNSIRYQYESGT-FYAGLSVDELEDGVYqgtft-----pgvip 194 Rhizobium legum...
2_pfamImport 116 LAGLKVGKFTSWWDD-GLGGETDELAS-------NSKFNSIRYTYDAGS-FWAGVSVDELEGVSVsyn----------kv 176
1_pfamImport 106 LGGLRVGKFYSWWDD-DLSGETDLLSS-------NTLFNSIRYTYDTGS-FWAGISVDELEGTGSqfati-----tgaad 171
WP_004683739  75 LGGLYAGYNFDMGNNfVLGVDGDITYN----------------------------DLDASHSDTD--------------- 111 Brucella
Q8YG56       141 LGGLRVGIDESEFHT-FTGYLGDVINDdvi-saGSYRTGKISYTFTGGNgFSAVIALEQGGDNDG--------------- 203 Brucella melite...
Q8KJM9       153 LGGLRVGKDWSAFDM-FIGYAGDVLNQmli-pyGAFDTNVVQYYFDAGNgFTAVVSLEEGSGLVGti------------- 217 Mesorhizobium loti
Q985A4       155 LGGLRVGKDETVYDQ-FIGYAGNVIQDtii-pyGIKDTNVVSYYFDAGSgFSGVVSLEEGTG-ANti------------- 218 Mesorhizobium loti
Q8KJF5       139 LGGLRVGKDESAFDT-FIGYAGDVINDslv-pyGDFDTNVVQYYFDAGNgFSAVVSLEEGSGVVGti------------- 203 Mesorhizobium loti
P55448       141 LGGFKAGFFYSWWDK-GLNGETDSLAN-------ITEFNSIAYLYEGGA-FQAGVAINELEGATT--------------- 196 Sinorhizobium f...
Q89F13       263 GGSYGTNAIg-gSRSPNLVGQVRVDQAWGLFQASVAahdnhvgyyganettgHPDDKWGWAVQLALSIKnipTGAGdTIN 341 Bradyrhizobium ...
Q05811       195 GTTDFTADDg--PNNVGVAFGIGGTAGAFSYQVTGG----------------WDVDNEDGAIRAMGTVE---IGPG-TFG 252 Rhizobium legum...
2_pfamImport 177 N----YDKNgntSNNVGVAAGVGAKFDSVSFALIGG----------------YDTDRENGAVRLIAEAG---VGPG-TLG 232
1_pfamImport 172 PVTGLFPLSqepDNNVGITAGVGGKFGAATLQLIGS----------------YDVDQEEGAIRAMVFAD---IGPG-TLG 231
WP_004683739 112 -------------PDLDLTTGVDSKL------------------------------RWSGAVRARMGV----AMDRwMPY 144 Brucella
Q8YG56       204 -GYTGTTNYhidGYMPDVVGGLKYAGGWGSIAGVVA----------------YDSVIEEWAAKVRGDVN---ITDQfSVW 263 Brucella melite...
Q8KJM9       218 -----------dSYVPHLVGGVKYTQHWGAITGVVA----------------YDSNYESVAGKVRIDVD---VTDQlSLF 267 Mesorhizobium loti
Q985A4       219 -----------dSYVPHVVGGLKYKADWGAITGVVA----------------YDSNYEEVAGKVRLDVN---VTKElSLF 268 Mesorhizobium loti
Q8KJF5       204 -----------dSYVPHVVGGVKYTQGWGAITGVVA----------------YDSNYEEVAGKVRLDVT---ATEAlSLF 253 Mesorhizobium loti
P55448       197 K-----------ANGIGVQGIVSATVGGVSIDLLGG----------------YDTEVEEGAIRALVSAE---LGPG-VFQ 245 Sinorhizobium f...
Q89F13       342 IQAVYTDGATRYnfqnlsgssyalygnsgvagaygsigfanapdtvfvTGSSQetvktwgfrgaythnwdaaWNTaiyga 421 Bradyrhizobium ...
Q05811       253 LAGVYSSGPNSY------------------------------------YSSAE-------------------WAV----- 272 Rhizobium legum...
2_pfamImport 233 LAGVWASGANAY------------------------------------YNVSE-------------------WAV----- 252
1_pfamImport 232 LAGVWASGPNAY------------------------------------YALSE-------------------WTV----- 251
WP_004683739 145 IAGGVAFG------------------------------------------------------------------------ 152 Brucella
Q8YG56       264 LQGAYSSAA---------------------------------------TPDQNygqw------------ggdWAV----- 287 Brucella melite...
Q8KJM9       268 GMFGYGSSG---------------------------------------KLNDDvtnaidahgrgfykswggnWGF----- 303 Mesorhizobium loti
Q985A4       269 VMGGYGTDD---------------------------------------NLKDPsnfvnahgr-sqykpwggnWAV----- 303 Mesorhizobium loti
Q8KJF5       254 IMAGYGTDD---------------------------------------NLNDPtyaipagdr-gfykqwggnWAI----- 288 Mesorhizobium loti
P55448       246 IAGVWASDPNVY------------------------------------FAASE-------------------WTV----- 265 Sinorhizobium f...
Q89F13       422 YAQAQFGTLAKTTLCGAg----GAGGVfggla-----gvtsCNPDFAIGQLGLVTRWTPVKNLTFSADLSWTHldqkysg 492 Bradyrhizobium ...
Q05811       273 AAEYAIKATDKLKITPGrw-hgHVPED--------------FDGLGDAWKVGLTVDYQIVENFYAKASVQYLD------- 330 Rhizobium legum...
2_pfamImport 253 AASYAIKATDKLKITPGvqyysGYGLAsw-----------dNFSNNDAWKAGLTVDYKITDGFSTRLTANYLD------- 314
1_pfamImport 252 AAEYAIKATDRLTITPAvqylgNVGDKitvvntgataivsnDWSNRDAWTAGATIDYKITDGLSTKITANYYD------- 324
WP_004683739 153 ------NVKNSVSLTDGiesigVSQ-----------------SKTMTGWAAGAGVDYAATDNVIVRLEYRYTDyghkdfs 209 Brucella
Q8YG56       288 WGGLKYQATQKAAFNLQaa-----------------------hDDWGKTAVTANVAYELVPGFTVTPEVSYTKfgge--- 341 Brucella melite...
Q8KJM9       304 WAGATYKLNETTSLNLQls-----------------------gDQLRNYGVAANVAYAFLADFTITAELDYDRygdfavg 360 Mesorhizobium loti
Q985A4       304 WGGGTYKFNDKTAFNVQas-----------------------aDDDKNYALAANVAYTIVPGFTITTEVDWDHygnygnp 360 Mesorhizobium loti
Q8KJF5       289 WGGGTYTVNEKTAFNLQvs-----------------------yDEAKEFGLAANVAYKIVPGLTITAEVDWAHndhdsng 345 Mesorhizobium loti
P55448       266 ATSYRYNATEKLAITPGlhywgDYGF----------------VSDADQWRGGLAVDYKITSGLASRVSVQYTSrd----- 324 Sinorhizobium f...
Q89F13       493 tvgvtpnvvtakpaatyELKDQDSIAMI 520 Bradyrhizobium japonicum
Q05811       331 -----------------PQDGEDSTSGY 341 Rhizobium leguminosarum bv. viciae
2_pfamImport 315 -----------------VEKKPEVWTGF 325
1_pfamImport 325 -----------------EDGQDDQVTGF 335
WP_004683739 210 vvd-----gdlsvearnKFKTHDIRLGV 232 Brucella
Q8YG56       342 --------------wknTVAEDNAWGGI 355 Brucella melitensis bv. 1 str. 16M
Q8KJM9       361 k--------vdpsiswaNANKKSSVGGI 380 Mesorhizobium loti
Q985A4       361 ----------slygnwtKANKKDSVGGI 378 Mesorhizobium loti
Q8KJF5       346 -----------ynwtgiPAGKSNAVGGI 362 Mesorhizobium loti
P55448       325 ----------------iGADTEDFVSGF 336 Sinorhizobium fredii NGR234
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap