Conserved Protein Domain Family
Csx1_III-U

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cd09741: Csx1_III-U 
CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family
Statistics
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PSSM-Id: 187872
Aligned: 17 rows
Threshold Bit Score: 176.378
Created: 23-Nov-2009
Updated: 17-Jan-2013
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q0ADY9        11 PRRILLCVTGLSPQIVTETLYALAVArtppfiPTEVHLL--TTTDGARLARAALLhpdgghfhall-ndqpqighprFDE 87  Nitrosomonas eu...
Q2LQV9         1 MKNILLAVTGLSPQVLTETLYALHQQgq---iVQSIQVI--TTRQGKEKINAYLLsptdgqyysylkdyginpssisFCA 75  Syntrophus acid...
Q2FPZ3         9 MKTAIIAPIGTSPPVITAGIDALDEP------VSDLVLL--ATKDEQVLAGCDVVklg-----------------lkSRY 63  Methanospirillu...
Q8R6W7        13 QKEVLIATLGSEPQVVTIALDELLKKgy---pLSKVIVI--YTKSPKVLDALRILndefl------------kefykMEF 75  Thermoanaerobac...
Q1Z9S5         1 MKNILLCTTGASPQVLTETLYGLYTQgk--afPDEMYVI--TTESSKAMLIDGLYknghlqalf----deygmpevvFNE 72  Photobacterium ...
ZP_01986070    1 MKNILLSTTGASPQVLTETLFALHQSgr--pfPEEVYVI--TTQSSLETLTNGLFrdghlnalk----eeyqlpdfkFDQ 72  Vibrio harveyi ...
YP_001528633  24 MKNIILAVTGLSPQVITETLYVLHQSgr---eVHAIHVI--TTREGKDRIFSDLLagedgryhrylneyginpetiaFDH 98  Desulfococcus o...
YP_001275792   2 SKKLLIATLGTAPAVVTEAVDLLTQQnc---rPDGVILL--RTEDHDVREAYELLath-----------------lpQHD 59  Roseiflexus sp....
YP_001635868  10 PSAVLVATLGGQPQVVTFALDALLARge---pIQEVYILhlALTNERTRQAWQRLqrefvdd---------yyagrrCRL 77  Chloroflexus au...
YP_001212481  13 RTAALVATLGVEPQVVTITLDLLLAGgw---tIGETVVI--YTKTPRVQEALVIIeeefkr-----------eaypgIKL 76  Pelotomaculum t...
Q0ADY9        88 DCIHIi-SHHQKKLADIRTPAENAAAADTITALVAQLTgna-daALHVSIAGGRKTMGFYLGYAFSLFArpQDTLSHIlV 165 Nitrosomonas eu...
Q2LQV9        76 ENIHVikDRNGIEIDDIAGEDDNERLLELCLSLTFQFTsds-qnTVFFSIAGGRKTMSACLMTAAHLYGrpHDRVYHVlV 154 Syntrophus acid...
Q2FPZ3        64 PRIRV--HVELLPFDDISSDVENLTFMAIAARVIKKEResygceRILLNVAGGRKNMCITLALLGQLLN--VDGVYHI-V 138 Methanospirillu...
Q8R6W7        76 TKVPVklYSRDEVIEDFLTEESIKALLSTIYKEVRELKqn--gfTIHFLISGGRKIMGIIGMLVAQLLFgdEDRLWYL-I 152 Thermoanaerobac...
Q1Z9S5        73 GHIWVieDDHGQPLSDAKGEADQAHMADFITRKVAELTadt-ntAIYASIAGGRKTMAFYMGYAMSLLGreQDSLSHVfV 151 Photobacterium ...
ZP_01986070   73 SHIWLieDEQGEYIDDAKSIEDQTSMANFITRKVYELTqdd-nvSIHASLAGGRKTMAFYFGYAMSIFGreQDTLSHVfV 151 Vibrio harveyi ...
YP_001528633  99 THVHVvaDTHGVERPDILTEADNERLLALCLGMAFELTkdp-dtAVFFSIAGGRKTMSACLTLAAQFYGrpQDRLYHVlV 177 Desulfococcus o...
YP_001275792  60 NLTWVe-PVSIGQYGDVDTPEAAVEFMQETCRILKTYRda--gyRLFVSIAGGRKAMSALLALAVQFYG--AERLFHIwV 134 Roseiflexus sp....
YP_001635868  78 RQVPI--GANGSELTDIRTTTDVEIAFQAIRQLIVDLKtn--grRLHLCLSGGRRMMALLATSIAALYCdhQDRLWHM-H 152 Chloroflexus au...
YP_001212481  77 RAVAV--ASAEGMTGDFCTDEELQSLLRVLYTEVRHLRqa--grVVHLCVSGGRKVMGIMGMVVAQLLFgpDDYVWHL-I 151 Pelotomaculum t...
Q0ADY9       166 SSPfegh-----------pdffYPPRQPRRLVTRDGHHidta------eavVTLAEIPVVRLRhglpval--itgragfS 226 Nitrosomonas eu...
Q2LQV9       155 SPEfesn-----------rdffYPPRESVSIELMDRNGeqyvke--trfarITLTSVPFISVRnrieddll-kepqdppT 220 Syntrophus acid...
Q2FPZ3       139 NHEvklfnqhlermrptmmrlfRAEKEEDKIMIYADNRemfeyilyppkneYELIRIPTLPYPvsyi--------ssllS 210 Methanospirillu...
Q8R6W7       153 TEG-------------------WEPGNERKLHLSSEEK-------------VWLVQIPVIRWSeastlmr--tvaeigdP 198 Thermoanaerobac...
Q1Z9S5       152 NDEfefv-----------sdfyFPTLRDNWITGKKPGSlvnt-----kdaiVTLAEIPFVRMRkkfehdlisqiedasfS 215 Photobacterium ...
ZP_01986070  152 DDQyefv-----------rdfwYPTKAPKWVTGKYGQGeidl-----skatVTLAEIPFVRMRtsiepslitslanlsfS 215 Vibrio harveyi ...
YP_001528633 178 SPDfess-----------reffYPPKESKTIALKAKNGqayykd--tryaeINLISVPFVSIRdslskdvl-kaskppgA 243 Desulfococcus o...
YP_001275792 135 PPWleaegeiaq-frnlpeedlIQKLHPPLNTMTPEDR-------------PRLVDLPFIGLFpwledirdalkgvvspE 200 Roseiflexus sp....
YP_001635868 153 TPEtt----------------lQRVKDGAQMHVQPADG-------------VSLIQIPLTPWGayfpglr---llaqpdS 200 Chloroflexus au...
YP_001212481 152 TEG-------------------WQPGAGRQLHLPPDKG-------------VWLVPVPVLRWNeagmlmq--avaelkdP 197 Pelotomaculum t...
Q0ADY9       227 ETVATLQQ 234 Nitrosomonas eutropha C91
Q2LQV9       221 LMLSLIRE 228 Syntrophus aciditrophicus SB
Q2FPZ3       211 RVVFDPYM 218 Methanospirillum hungatei JF-1
Q8R6W7       199 SEVEAWYK 206 Thermoanaerobacter tengcongensis
Q1Z9S5       216 KTVAMMNS 223 Photobacterium profundum 3TCK
ZP_01986070  216 QTVGMLNA 223 Vibrio harveyi HY01
YP_001528633 244 LLLSLIRE 251 Desulfococcus oleovorans Hxd3
YP_001275792 201 RSLKTLLQ 208 Roseiflexus sp. RS-1
YP_001635868 201 RSIQDQLQ 208 Chloroflexus aurantiacus J-10-fl
YP_001212481 198 AEVMAWQE 205 Pelotomaculum thermopropionicum SI
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