1AN4,4ATI


Conserved Protein Domain Family
bHLHzip_USF_MITF

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cd11387: bHLHzip_USF_MITF 
Click on image for an interactive view with Cn3D
basic Helix-Loop-Helix-zipper (bHLHzip) domain found in USF/MITF family
The USF (upstream stimulatory factor)/MITF (microphthalmia-associated transcription factor) family includes two bHLHzip transcription factor subfamilies. USFs are ubiquitously expressed and key regulators of a wide number of gene regulation networks, including the stress and immune responses, cell cycle and proliferation, lipid and glucid metabolism. USFs recruit chromatin remodeling enzymes and interact with co-activators and the members of the transcription pre-initiation complex. USFs interact with high affinity to E-box regulatory elements. The MITF (also known as microphthalmia-TFE, or MiT) subfamily comprises four genes in mammals (MITF, TFE3, TFEB, and TFEC); each gene has different functions. MITF is involved in neural crest melanocytes development as well as the pigmented retinal epithelium. TFEB is required for vascularization of the mouse placenta. TFE3 is involved in B cell function. TFEC regulates gene expression in macrophages. The MITF subfamily proteins can form homodimers or heterodimers with each other but not with other bHLH or bHLHzip proteins.
Statistics
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PSSM-Id: 381393
Aligned: 22 rows
Threshold Bit Score: 62.2713
Created: 27-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingdimer interface
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Structure:1AN4; Homo sapiens USF1 bHLHzip basic region binds DNA, contacts at 4.0 A.
  • Citation:PMID 8306960
  • Structure:4ATI; Mus musculus Mitf binds DNA, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1      # #  #####   #                                         ####                   
1AN4_A       8 QHNEVERRRRDKINNWIVQLSKIIPdssme--------------------stksgQSKGGILSKASDYIQELRQSNHR 65   human
Q68DE3      22 THNAVERHRKKKINAGINRIGELIPcsp------------------------alkQSKNMILDQAFKYITELKRQNDE 75   human
P17106     226 SHKEVERRRRENINTAINVLSDLLPvr---------------------------eSSKAAILACAAEYIQKLKETDEA 276  Saccharomyces cere...
CUA77100   290 SHNAVERRRRDNINEKISELSTLIPecllsdnpaaaakddilgavdeegaregpkANKGMILRKSVDYIKYLQQLVRA 367  Rhizoctonia solani
ORX98159   161 QHNRVERRRRDLINTSIEELSEIVPlaql----------------------egvkFARGNVLRLTIDYIKELQQEIQS 216  Basidiobolus meris...
KRX93451   176 SHNLVERRRRSGINGQIRKLARLLPdwne----------------------kkkdESIGSILAKTVEYIKQLKEESMN 231  Trichinella pseudo...
CDH55973    83 NHNHVERRRRDNINNTILQISQLVPeaqqh--------------------qtgqkPNKGKVLEQALDYIQALQKENQE 140  Lichtheimia corymb...
KFD50393   221 FHNQVERRRRDTINAQIAKIAKILPpvrgv--------------------agrqtESIGKTLSRAVEYIEELKSHVRP 278  pig whipworm
ELR19811    65 LHNAAERRRKQKFNGKLTELNDLLPpsgk-----------------------qskPSKIRILERAVDYTRQLHAQLAA 119  Acanthamoeba caste...
AML78281   172 SHNEFERRRRDAINAKLTELKHLVPsln------------------------nlvSNKATVLSKAIDYISQLANENTR 225  Gloeochaete wittro...

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